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PAQR4 (progestin and adipoQ receptor family member 4)

Identity

Alias_namesprogestin and adipoQ receptor family member IV
Alias_symbol (synonym)FLJ30002
Other alias-
HGNC (Hugo) PAQR4
LocusID (NCBI) 124222
Atlas_Id 71659
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 2969245 and ends at 2973489 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ANKRD10 (13q34) / PAQR4 (16p13.3)PAQR4 (16p13.3) / PAQR4 (16p13.3)PKMYT1 (16p13.3) / PAQR4 (16p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PAQR4   26386
Cards
Entrez_Gene (NCBI)PAQR4  124222  progestin and adipoQ receptor family member 4
Aliases
GeneCards (Weizmann)PAQR4
Ensembl hg19 (Hinxton)ENSG00000162073 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162073 [Gene_View]  chr16:2969245-2973489 [Contig_View]  PAQR4 [Vega]
ICGC DataPortalENSG00000162073
TCGA cBioPortalPAQR4
AceView (NCBI)PAQR4
Genatlas (Paris)PAQR4
WikiGenes124222
SOURCE (Princeton)PAQR4
Genetics Home Reference (NIH)PAQR4
Genomic and cartography
GoldenPath hg38 (UCSC)PAQR4  -     chr16:2969245-2973489 +  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PAQR4  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblPAQR4 - 16p13.3 [CytoView hg19]  PAQR4 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIPAQR4 [Mapview hg19]  PAQR4 [Mapview hg38]
OMIM614578   
Gene and transcription
Genbank (Entrez)AF086057 AK054564 AK092173 AK291373 AK295348
RefSeq transcript (Entrez)NM_001284511 NM_001284512 NM_001284513 NM_001324118 NM_152341
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PAQR4
Cluster EST : UnigeneHs.351474 [ NCBI ]
CGAP (NCI)Hs.351474
Alternative Splicing GalleryENSG00000162073
Gene ExpressionPAQR4 [ NCBI-GEO ]   PAQR4 [ EBI - ARRAY_EXPRESS ]   PAQR4 [ SEEK ]   PAQR4 [ MEM ]
Gene Expression Viewer (FireBrowse)PAQR4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)124222
GTEX Portal (Tissue expression)PAQR4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N4S7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N4S7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N4S7
Splice isoforms : SwissVarQ8N4S7
PhosPhoSitePlusQ8N4S7
Domains : Interpro (EBI)AdipoR/HlyIII-related   
Domain families : Pfam (Sanger)HlyIII (PF03006)   
Domain families : Pfam (NCBI)pfam03006   
Conserved Domain (NCBI)PAQR4
DMDM Disease mutations124222
Blocks (Seattle)PAQR4
SuperfamilyQ8N4S7
Human Protein AtlasENSG00000162073
Peptide AtlasQ8N4S7
HPRD08697
IPIIPI00455669   IPI00455670   IPI00185329   
Protein Interaction databases
DIP (DOE-UCLA)Q8N4S7
IntAct (EBI)Q8N4S7
FunCoupENSG00000162073
BioGRIDPAQR4
STRING (EMBL)PAQR4
ZODIACPAQR4
Ontologies - Pathways
QuickGOQ8N4S7
Ontology : AmiGOreceptor activity  integral component of membrane  
Ontology : EGO-EBIreceptor activity  integral component of membrane  
NDEx NetworkPAQR4
Atlas of Cancer Signalling NetworkPAQR4
Wikipedia pathwaysPAQR4
Orthology - Evolution
OrthoDB124222
GeneTree (enSembl)ENSG00000162073
Phylogenetic Trees/Animal Genes : TreeFamPAQR4
HOVERGENQ8N4S7
HOGENOMQ8N4S7
Homologs : HomoloGenePAQR4
Homology/Alignments : Family Browser (UCSC)PAQR4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPAQR4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PAQR4
dbVarPAQR4
ClinVarPAQR4
1000_GenomesPAQR4 
Exome Variant ServerPAQR4
ExAC (Exome Aggregation Consortium)PAQR4 (select the gene name)
Genetic variants : HAPMAP124222
Genomic Variants (DGV)PAQR4 [DGVbeta]
DECIPHERPAQR4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPAQR4 
Mutations
ICGC Data PortalPAQR4 
TCGA Data PortalPAQR4 
Broad Tumor PortalPAQR4
OASIS PortalPAQR4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPAQR4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPAQR4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PAQR4
DgiDB (Drug Gene Interaction Database)PAQR4
DoCM (Curated mutations)PAQR4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PAQR4 (select a term)
intoGenPAQR4
Cancer3DPAQR4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614578   
Orphanet
MedgenPAQR4
Genetic Testing Registry PAQR4
NextProtQ8N4S7 [Medical]
TSGene124222
GENETestsPAQR4
Target ValidationPAQR4
Huge Navigator PAQR4 [HugePedia]
snp3D : Map Gene to Disease124222
BioCentury BCIQPAQR4
ClinGenPAQR4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD124222
Chemical/Pharm GKB GenePA134945614
Clinical trialPAQR4
Miscellaneous
canSAR (ICR)PAQR4 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePAQR4
EVEXPAQR4
GoPubMedPAQR4
iHOPPAQR4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:35:31 CEST 2017

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