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PAQR5 (progestin and adipoQ receptor family member 5)

Identity

Alias_namesprogestin and adipoQ receptor family member V
Alias_symbol (synonym)FLJ20190
MPRG
Other alias
HGNC (Hugo) PAQR5
LocusID (NCBI) 54852
Atlas_Id 52536
Location 15q23  [Link to chromosome band 15q23]
Location_base_pair Starts at 69314403 and ends at 69407637 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CLN6 (15q23) / PAQR5 (15q23)CLN6 15q23 / PAQR5 15q23

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PAQR5   29645
Cards
Entrez_Gene (NCBI)PAQR5  54852  progestin and adipoQ receptor family member 5
AliasesMPRG
GeneCards (Weizmann)PAQR5
Ensembl hg19 (Hinxton)ENSG00000137819 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000137819 [Gene_View]  chr15:69314403-69407637 [Contig_View]  PAQR5 [Vega]
ICGC DataPortalENSG00000137819
TCGA cBioPortalPAQR5
AceView (NCBI)PAQR5
Genatlas (Paris)PAQR5
WikiGenes54852
SOURCE (Princeton)PAQR5
Genetics Home Reference (NIH)PAQR5
Genomic and cartography
GoldenPath hg38 (UCSC)PAQR5  -     chr15:69314403-69407637 +  15q23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PAQR5  -     15q23   [Description]    (hg19-Feb_2009)
EnsemblPAQR5 - 15q23 [CytoView hg19]  PAQR5 - 15q23 [CytoView hg38]
Mapping of homologs : NCBIPAQR5 [Mapview hg19]  PAQR5 [Mapview hg38]
OMIM607781   
Gene and transcription
Genbank (Entrez)AK000197 AW779994 AY424283 BC039234 BE747523
RefSeq transcript (Entrez)NM_001104554 NM_017705
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PAQR5
Cluster EST : UnigeneHs.591096 [ NCBI ]
CGAP (NCI)Hs.591096
Alternative Splicing GalleryENSG00000137819
Gene ExpressionPAQR5 [ NCBI-GEO ]   PAQR5 [ EBI - ARRAY_EXPRESS ]   PAQR5 [ SEEK ]   PAQR5 [ MEM ]
Gene Expression Viewer (FireBrowse)PAQR5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54852
GTEX Portal (Tissue expression)PAQR5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NXK6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NXK6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NXK6
Splice isoforms : SwissVarQ9NXK6
PhosPhoSitePlusQ9NXK6
Domains : Interpro (EBI)AdipoR/HlyIII-related   
Domain families : Pfam (Sanger)HlyIII (PF03006)   
Domain families : Pfam (NCBI)pfam03006   
Conserved Domain (NCBI)PAQR5
DMDM Disease mutations54852
Blocks (Seattle)PAQR5
SuperfamilyQ9NXK6
Human Protein AtlasENSG00000137819
Peptide AtlasQ9NXK6
HPRD08475
IPIIPI00293360   
Protein Interaction databases
DIP (DOE-UCLA)Q9NXK6
IntAct (EBI)Q9NXK6
FunCoupENSG00000137819
BioGRIDPAQR5
STRING (EMBL)PAQR5
ZODIACPAQR5
Ontologies - Pathways
QuickGOQ9NXK6
Ontology : AmiGOsteroid hormone receptor activity  steroid binding  protein binding  plasma membrane  multicellular organism development  integral component of membrane  steroid hormone mediated signaling pathway  oogenesis  response to steroid hormone  
Ontology : EGO-EBIsteroid hormone receptor activity  steroid binding  protein binding  plasma membrane  multicellular organism development  integral component of membrane  steroid hormone mediated signaling pathway  oogenesis  response to steroid hormone  
Pathways : BIOCARTAHow Progesterone Initiates the Oocyte Maturation [Genes]   
NDEx NetworkPAQR5
Atlas of Cancer Signalling NetworkPAQR5
Wikipedia pathwaysPAQR5
Orthology - Evolution
OrthoDB54852
GeneTree (enSembl)ENSG00000137819
Phylogenetic Trees/Animal Genes : TreeFamPAQR5
HOVERGENQ9NXK6
HOGENOMQ9NXK6
Homologs : HomoloGenePAQR5
Homology/Alignments : Family Browser (UCSC)PAQR5
Gene fusions - Rearrangements
Fusion: TCGACLN6 15q23 PAQR5 15q23 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPAQR5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PAQR5
dbVarPAQR5
ClinVarPAQR5
1000_GenomesPAQR5 
Exome Variant ServerPAQR5
ExAC (Exome Aggregation Consortium)PAQR5 (select the gene name)
Genetic variants : HAPMAP54852
Genomic Variants (DGV)PAQR5 [DGVbeta]
DECIPHERPAQR5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPAQR5 
Mutations
ICGC Data PortalPAQR5 
TCGA Data PortalPAQR5 
Broad Tumor PortalPAQR5
OASIS PortalPAQR5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPAQR5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPAQR5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PAQR5
DgiDB (Drug Gene Interaction Database)PAQR5
DoCM (Curated mutations)PAQR5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PAQR5 (select a term)
intoGenPAQR5
Cancer3DPAQR5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607781   
Orphanet
MedgenPAQR5
Genetic Testing Registry PAQR5
NextProtQ9NXK6 [Medical]
TSGene54852
GENETestsPAQR5
Target ValidationPAQR5
Huge Navigator PAQR5 [HugePedia]
snp3D : Map Gene to Disease54852
BioCentury BCIQPAQR5
ClinGenPAQR5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54852
Chemical/Pharm GKB GenePA142671199
Clinical trialPAQR5
Miscellaneous
canSAR (ICR)PAQR5 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePAQR5
EVEXPAQR5
GoPubMedPAQR5
iHOPPAQR5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:48:28 CEST 2017

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