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PAQR6 (progestin and adipoQ receptor family member 6)

Identity

Alias_namesprogestin and adipoQ receptor family member VI
Alias_symbol (synonym)FLJ22672
PRdelta
Other alias
HGNC (Hugo) PAQR6
LocusID (NCBI) 79957
Atlas_Id 54527
Location 1q22  [Link to chromosome band 1q22]
Location_base_pair Starts at 156213112 and ends at 156217908 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
LOC100507412 (-) / PAQR6 (1q22)PAQR6 (1q22) / PAQR6 (1q22)SMG5 (1q22) / PAQR6 (1q22)
WDR74 (11q12.3) / PAQR6 (1q22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PAQR6   30132
Cards
Entrez_Gene (NCBI)PAQR6  79957  progestin and adipoQ receptor family member 6
AliasesPRdelta
GeneCards (Weizmann)PAQR6
Ensembl hg19 (Hinxton)ENSG00000160781 [Gene_View]  chr1:156213112-156217908 [Contig_View]  PAQR6 [Vega]
Ensembl hg38 (Hinxton)ENSG00000160781 [Gene_View]  chr1:156213112-156217908 [Contig_View]  PAQR6 [Vega]
ICGC DataPortalENSG00000160781
TCGA cBioPortalPAQR6
AceView (NCBI)PAQR6
Genatlas (Paris)PAQR6
WikiGenes79957
SOURCE (Princeton)PAQR6
Genetics Home Reference (NIH)PAQR6
Genomic and cartography
GoldenPath hg19 (UCSC)PAQR6  -     chr1:156213112-156217908 -  1q22   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PAQR6  -     1q22   [Description]    (hg38-Dec_2013)
EnsemblPAQR6 - 1q22 [CytoView hg19]  PAQR6 - 1q22 [CytoView hg38]
Mapping of homologs : NCBIPAQR6 [Mapview hg19]  PAQR6 [Mapview hg38]
OMIM614579   
Gene and transcription
Genbank (Entrez)AA310453 AF455045 AF455046 AF455047 AK026325
RefSeq transcript (Entrez)NM_001272104 NM_001272105 NM_001272106 NM_001272107 NM_001272108 NM_001272109 NM_001272110 NM_001272111 NM_001272112 NM_001272113 NM_024897 NM_198406
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)PAQR6
Cluster EST : UnigeneHs.235873 [ NCBI ]
CGAP (NCI)Hs.235873
Alternative Splicing GalleryENSG00000160781
Gene ExpressionPAQR6 [ NCBI-GEO ]   PAQR6 [ EBI - ARRAY_EXPRESS ]   PAQR6 [ SEEK ]   PAQR6 [ MEM ]
Gene Expression Viewer (FireBrowse)PAQR6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79957
GTEX Portal (Tissue expression)PAQR6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6TCH4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6TCH4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6TCH4
Splice isoforms : SwissVarQ6TCH4
PhosPhoSitePlusQ6TCH4
Domains : Interpro (EBI)AdipoR/HlyIII-related   
Domain families : Pfam (Sanger)HlyIII (PF03006)   
Domain families : Pfam (NCBI)pfam03006   
Conserved Domain (NCBI)PAQR6
DMDM Disease mutations79957
Blocks (Seattle)PAQR6
SuperfamilyQ6TCH4
Human Protein AtlasENSG00000160781
Peptide AtlasQ6TCH4
HPRD17820
IPIIPI00398297   IPI00166043   IPI00456911   IPI00456912   IPI00450947   IPI00385139   IPI00514089   
Protein Interaction databases
DIP (DOE-UCLA)Q6TCH4
IntAct (EBI)Q6TCH4
FunCoupENSG00000160781
BioGRIDPAQR6
STRING (EMBL)PAQR6
ZODIACPAQR6
Ontologies - Pathways
QuickGOQ6TCH4
Ontology : AmiGOsteroid hormone receptor activity  steroid binding  plasma membrane  integral component of membrane  steroid hormone mediated signaling pathway  response to steroid hormone  
Ontology : EGO-EBIsteroid hormone receptor activity  steroid binding  plasma membrane  integral component of membrane  steroid hormone mediated signaling pathway  response to steroid hormone  
NDEx NetworkPAQR6
Atlas of Cancer Signalling NetworkPAQR6
Wikipedia pathwaysPAQR6
Orthology - Evolution
OrthoDB79957
GeneTree (enSembl)ENSG00000160781
Phylogenetic Trees/Animal Genes : TreeFamPAQR6
HOVERGENQ6TCH4
HOGENOMQ6TCH4
Homologs : HomoloGenePAQR6
Homology/Alignments : Family Browser (UCSC)PAQR6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPAQR6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PAQR6
dbVarPAQR6
ClinVarPAQR6
1000_GenomesPAQR6 
Exome Variant ServerPAQR6
ExAC (Exome Aggregation Consortium)PAQR6 (select the gene name)
Genetic variants : HAPMAP79957
Genomic Variants (DGV)PAQR6 [DGVbeta]
DECIPHER (Syndromes)1:156213112-156217908  ENSG00000160781
CONAN: Copy Number AnalysisPAQR6 
Mutations
ICGC Data PortalPAQR6 
TCGA Data PortalPAQR6 
Broad Tumor PortalPAQR6
OASIS PortalPAQR6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPAQR6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPAQR6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PAQR6
DgiDB (Drug Gene Interaction Database)PAQR6
DoCM (Curated mutations)PAQR6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PAQR6 (select a term)
intoGenPAQR6
Cancer3DPAQR6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614579   
Orphanet
MedgenPAQR6
Genetic Testing Registry PAQR6
NextProtQ6TCH4 [Medical]
TSGene79957
GENETestsPAQR6
Huge Navigator PAQR6 [HugePedia]
snp3D : Map Gene to Disease79957
BioCentury BCIQPAQR6
ClinGenPAQR6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79957
Chemical/Pharm GKB GenePA134931897
Clinical trialPAQR6
Miscellaneous
canSAR (ICR)PAQR6 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePAQR6
EVEXPAQR6
GoPubMedPAQR6
iHOPPAQR6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:13:31 CEST 2017

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