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PAQR8 (progestin and adipoQ receptor family member 8)

Identity

Alias (NCBI)C6orf33
LMPB1
MPRB
HGNC (Hugo) PAQR8
HGNC Alias symbLMPB1
MPRB
HGNC Previous nameC6orf33
HGNC Previous namechromosome 6 open reading frame 33
 progestin and adipoQ receptor family member VIII
LocusID (NCBI) 85315
Atlas_Id 52510
Location 6p12.2  [Link to chromosome band 6p12]
Location_base_pair Starts at 52362151 and ends at 52407777 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HMGN3 (6q14.1) / PAQR8 (6p12.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(6;6)(p12;q14) HMGN3/PAQR8


External links

Nomenclature
HGNC (Hugo)PAQR8   15708
Cards
Entrez_Gene (NCBI)PAQR8    progestin and adipoQ receptor family member 8
AliasesC6orf33; LMPB1; MPRB
GeneCards (Weizmann)PAQR8
Ensembl hg19 (Hinxton)ENSG00000170915 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170915 [Gene_View]  ENSG00000170915 [Sequence]  chr6:52362151-52407777 [Contig_View]  PAQR8 [Vega]
ICGC DataPortalENSG00000170915
TCGA cBioPortalPAQR8
AceView (NCBI)PAQR8
Genatlas (Paris)PAQR8
SOURCE (Princeton)PAQR8
Genetics Home Reference (NIH)PAQR8
Genomic and cartography
GoldenPath hg38 (UCSC)PAQR8  -     chr6:52362151-52407777 +  6p12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PAQR8  -     6p12.2   [Description]    (hg19-Feb_2009)
GoldenPathPAQR8 - 6p12.2 [CytoView hg19]  PAQR8 - 6p12.2 [CytoView hg38]
ImmunoBaseENSG00000170915
genome Data Viewer NCBIPAQR8 [Mapview hg19]  
OMIM607780   
Gene and transcription
Genbank (Entrez)AF313619 AF347029 AI655504 AI656485 AJ420470
RefSeq transcript (Entrez)NM_133367
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PAQR8
Alternative Splicing GalleryENSG00000170915
Gene ExpressionPAQR8 [ NCBI-GEO ]   PAQR8 [ EBI - ARRAY_EXPRESS ]   PAQR8 [ SEEK ]   PAQR8 [ MEM ]
Gene Expression Viewer (FireBrowse)PAQR8 [ Firebrowse - Broad ]
GenevisibleExpression of PAQR8 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)85315
GTEX Portal (Tissue expression)PAQR8
Human Protein AtlasENSG00000170915-PAQR8 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TEZ7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TEZ7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TEZ7
Splice isoforms : SwissVarQ8TEZ7
PhosPhoSitePlusQ8TEZ7
Domains : Interpro (EBI)AdipoR/HlyIII-related   
Domain families : Pfam (Sanger)HlyIII (PF03006)   
Domain families : Pfam (NCBI)pfam03006   
Conserved Domain (NCBI)PAQR8
Blocks (Seattle)PAQR8
SuperfamilyQ8TEZ7
Human Protein Atlas [tissue]ENSG00000170915-PAQR8 [tissue]
Peptide AtlasQ8TEZ7
HPRD07415
IPIIPI00479237   IPI00967047   
Protein Interaction databases
DIP (DOE-UCLA)Q8TEZ7
IntAct (EBI)Q8TEZ7
BioGRIDPAQR8
STRING (EMBL)PAQR8
ZODIACPAQR8
Ontologies - Pathways
QuickGOQ8TEZ7
Ontology : AmiGOsteroid hormone receptor activity  steroid binding  Golgi apparatus  plasma membrane  plasma membrane  multicellular organism development  integral component of membrane  signaling receptor activity  steroid hormone mediated signaling pathway  oogenesis  response to steroid hormone  
Ontology : EGO-EBIsteroid hormone receptor activity  steroid binding  Golgi apparatus  plasma membrane  plasma membrane  multicellular organism development  integral component of membrane  signaling receptor activity  steroid hormone mediated signaling pathway  oogenesis  response to steroid hormone  
NDEx NetworkPAQR8
Atlas of Cancer Signalling NetworkPAQR8
Wikipedia pathwaysPAQR8
Orthology - Evolution
OrthoDB85315
GeneTree (enSembl)ENSG00000170915
Phylogenetic Trees/Animal Genes : TreeFamPAQR8
HOGENOMQ8TEZ7
Homologs : HomoloGenePAQR8
Homology/Alignments : Family Browser (UCSC)PAQR8
Gene fusions - Rearrangements
Fusion : MitelmanHMGN3/PAQR8 [6q14.1/6p12.2]  
Fusion : QuiverPAQR8
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPAQR8 [hg38]
dbVarPAQR8
ClinVarPAQR8
MonarchPAQR8
1000_GenomesPAQR8 
Exome Variant ServerPAQR8
GNOMAD BrowserENSG00000170915
Varsome BrowserPAQR8
Genomic Variants (DGV)PAQR8 [DGVbeta]
DECIPHERPAQR8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPAQR8 
Mutations
ICGC Data PortalPAQR8 
TCGA Data PortalPAQR8 
Broad Tumor PortalPAQR8
OASIS PortalPAQR8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPAQR8  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DPAQR8
Mutations and Diseases : HGMDPAQR8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PAQR8
DgiDB (Drug Gene Interaction Database)PAQR8
DoCM (Curated mutations)PAQR8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PAQR8 (select a term)
intoGenPAQR8
Cancer3DPAQR8(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607780   
Orphanet
DisGeNETPAQR8
MedgenPAQR8
Genetic Testing Registry PAQR8
NextProtQ8TEZ7 [Medical]
GENETestsPAQR8
Target ValidationPAQR8
Huge Navigator PAQR8 [HugePedia]
ClinGenPAQR8
Clinical trials, drugs, therapy
MyCancerGenomePAQR8
Protein Interactions : CTD
Pharm GKB GenePA25934
PharosQ8TEZ7
Clinical trialPAQR8
Miscellaneous
canSAR (ICR)PAQR8 (select the gene name)
HarmonizomePAQR8
DataMed IndexPAQR8
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXPAQR8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jan 1 18:30:26 CET 2021

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