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PAQR8 (progestin and adipoQ receptor family member 8)

Identity

Alias_namesC6orf33
chromosome 6 open reading frame 33
progestin and adipoQ receptor family member VIII
Alias_symbol (synonym)LMPB1
MPRB
Other alias
HGNC (Hugo) PAQR8
LocusID (NCBI) 85315
Atlas_Id 52510
Location 6p12.2  [Link to chromosome band 6p12]
Location_base_pair Starts at 52362128 and ends at 52407777 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HMGN3 (6q14.1) / PAQR8 (6p12.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(6;6)(p12;q14) HMGN3/PAQR8


External links

Nomenclature
HGNC (Hugo)PAQR8   15708
Cards
Entrez_Gene (NCBI)PAQR8  85315  progestin and adipoQ receptor family member 8
AliasesC6orf33; LMPB1; MPRB
GeneCards (Weizmann)PAQR8
Ensembl hg19 (Hinxton)ENSG00000170915 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170915 [Gene_View]  ENSG00000170915 [Sequence]  chr6:52362128-52407777 [Contig_View]  PAQR8 [Vega]
ICGC DataPortalENSG00000170915
TCGA cBioPortalPAQR8
AceView (NCBI)PAQR8
Genatlas (Paris)PAQR8
WikiGenes85315
SOURCE (Princeton)PAQR8
Genetics Home Reference (NIH)PAQR8
Genomic and cartography
GoldenPath hg38 (UCSC)PAQR8  -     chr6:52362128-52407777 +  6p12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PAQR8  -     6p12.2   [Description]    (hg19-Feb_2009)
EnsemblPAQR8 - 6p12.2 [CytoView hg19]  PAQR8 - 6p12.2 [CytoView hg38]
Mapping of homologs : NCBIPAQR8 [Mapview hg19]  PAQR8 [Mapview hg38]
OMIM607780   
Gene and transcription
Genbank (Entrez)AF313619 AF347029 AI655504 AI656485 AJ420470
RefSeq transcript (Entrez)NM_133367
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PAQR8
Cluster EST : UnigeneHs.239388 [ NCBI ]
CGAP (NCI)Hs.239388
Alternative Splicing GalleryENSG00000170915
Gene ExpressionPAQR8 [ NCBI-GEO ]   PAQR8 [ EBI - ARRAY_EXPRESS ]   PAQR8 [ SEEK ]   PAQR8 [ MEM ]
Gene Expression Viewer (FireBrowse)PAQR8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)85315
GTEX Portal (Tissue expression)PAQR8
Human Protein AtlasENSG00000170915-PAQR8 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TEZ7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TEZ7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TEZ7
Splice isoforms : SwissVarQ8TEZ7
PhosPhoSitePlusQ8TEZ7
Domains : Interpro (EBI)AdipoR/HlyIII-related   
Domain families : Pfam (Sanger)HlyIII (PF03006)   
Domain families : Pfam (NCBI)pfam03006   
Conserved Domain (NCBI)PAQR8
DMDM Disease mutations85315
Blocks (Seattle)PAQR8
SuperfamilyQ8TEZ7
Human Protein Atlas [tissue]ENSG00000170915-PAQR8 [tissue]
Peptide AtlasQ8TEZ7
HPRD07415
IPIIPI00479237   IPI00967047   
Protein Interaction databases
DIP (DOE-UCLA)Q8TEZ7
IntAct (EBI)Q8TEZ7
FunCoupENSG00000170915
BioGRIDPAQR8
STRING (EMBL)PAQR8
ZODIACPAQR8
Ontologies - Pathways
QuickGOQ8TEZ7
Ontology : AmiGOsteroid binding  Golgi apparatus  plasma membrane  plasma membrane  multicellular organism development  integral component of membrane  signaling receptor activity  oogenesis  
Ontology : EGO-EBIsteroid binding  Golgi apparatus  plasma membrane  plasma membrane  multicellular organism development  integral component of membrane  signaling receptor activity  oogenesis  
NDEx NetworkPAQR8
Atlas of Cancer Signalling NetworkPAQR8
Wikipedia pathwaysPAQR8
Orthology - Evolution
OrthoDB85315
GeneTree (enSembl)ENSG00000170915
Phylogenetic Trees/Animal Genes : TreeFamPAQR8
HOVERGENQ8TEZ7
HOGENOMQ8TEZ7
Homologs : HomoloGenePAQR8
Homology/Alignments : Family Browser (UCSC)PAQR8
Gene fusions - Rearrangements
Fusion : MitelmanHMGN3/PAQR8 [6q14.1/6p12.2]  [t(6;6)(p12;q14)]  
Fusion : QuiverPAQR8
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPAQR8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PAQR8
dbVarPAQR8
ClinVarPAQR8
1000_GenomesPAQR8 
Exome Variant ServerPAQR8
ExAC (Exome Aggregation Consortium)ENSG00000170915
GNOMAD BrowserENSG00000170915
Varsome BrowserPAQR8
Genetic variants : HAPMAP85315
Genomic Variants (DGV)PAQR8 [DGVbeta]
DECIPHERPAQR8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPAQR8 
Mutations
ICGC Data PortalPAQR8 
TCGA Data PortalPAQR8 
Broad Tumor PortalPAQR8
OASIS PortalPAQR8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPAQR8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPAQR8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PAQR8
DgiDB (Drug Gene Interaction Database)PAQR8
DoCM (Curated mutations)PAQR8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PAQR8 (select a term)
intoGenPAQR8
Cancer3DPAQR8(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607780   
Orphanet
DisGeNETPAQR8
MedgenPAQR8
Genetic Testing Registry PAQR8
NextProtQ8TEZ7 [Medical]
TSGene85315
GENETestsPAQR8
Target ValidationPAQR8
Huge Navigator PAQR8 [HugePedia]
snp3D : Map Gene to Disease85315
BioCentury BCIQPAQR8
ClinGenPAQR8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD85315
Chemical/Pharm GKB GenePA25934
Clinical trialPAQR8
Miscellaneous
canSAR (ICR)PAQR8 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePAQR8
EVEXPAQR8
GoPubMedPAQR8
iHOPPAQR8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 11:28:31 CET 2018

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