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PAQR9 (progestin and adipoQ receptor family member 9)

Identity

Alias_namesprogestin and adipoQ receptor family member IX
Alias_symbol (synonym)FLJ41938
Other alias-
HGNC (Hugo) PAQR9
LocusID (NCBI) 344838
Atlas_Id 71660
Location 3q23  [Link to chromosome band 3q23]
Location_base_pair Starts at 142961231 and ends at 142963336 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GK5 (3q23) / PAQR9 (3q23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PAQR9   30131
Cards
Entrez_Gene (NCBI)PAQR9  344838  progestin and adipoQ receptor family member 9
Aliases
GeneCards (Weizmann)PAQR9
Ensembl hg19 (Hinxton)ENSG00000188582 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188582 [Gene_View]  chr3:142961231-142963336 [Contig_View]  PAQR9 [Vega]
ICGC DataPortalENSG00000188582
TCGA cBioPortalPAQR9
AceView (NCBI)PAQR9
Genatlas (Paris)PAQR9
WikiGenes344838
SOURCE (Princeton)PAQR9
Genetics Home Reference (NIH)PAQR9
Genomic and cartography
GoldenPath hg38 (UCSC)PAQR9  -     chr3:142961231-142963336 -  3q23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PAQR9  -     3q23   [Description]    (hg19-Feb_2009)
EnsemblPAQR9 - 3q23 [CytoView hg19]  PAQR9 - 3q23 [CytoView hg38]
Mapping of homologs : NCBIPAQR9 [Mapview hg19]  PAQR9 [Mapview hg38]
OMIM614580   
Gene and transcription
Genbank (Entrez)AK093381 AK123932 AY424287 BC030124 BC118666
RefSeq transcript (Entrez)NM_198504
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PAQR9
Cluster EST : UnigeneHs.656111 [ NCBI ]
CGAP (NCI)Hs.656111
Alternative Splicing GalleryENSG00000188582
Gene ExpressionPAQR9 [ NCBI-GEO ]   PAQR9 [ EBI - ARRAY_EXPRESS ]   PAQR9 [ SEEK ]   PAQR9 [ MEM ]
Gene Expression Viewer (FireBrowse)PAQR9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)344838
GTEX Portal (Tissue expression)PAQR9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZVX9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZVX9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZVX9
Splice isoforms : SwissVarQ6ZVX9
PhosPhoSitePlusQ6ZVX9
Domains : Interpro (EBI)AdipoR/HlyIII-related   
Domain families : Pfam (Sanger)HlyIII (PF03006)   
Domain families : Pfam (NCBI)pfam03006   
Conserved Domain (NCBI)PAQR9
DMDM Disease mutations344838
Blocks (Seattle)PAQR9
SuperfamilyQ6ZVX9
Human Protein AtlasENSG00000188582
Peptide AtlasQ6ZVX9
HPRD17821
IPIIPI00394849   IPI00945301   IPI00946875   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZVX9
IntAct (EBI)Q6ZVX9
FunCoupENSG00000188582
BioGRIDPAQR9
STRING (EMBL)PAQR9
ZODIACPAQR9
Ontologies - Pathways
QuickGOQ6ZVX9
Ontology : AmiGOsteroid hormone receptor activity  steroid binding  plasma membrane  integral component of membrane  steroid hormone mediated signaling pathway  response to steroid hormone  
Ontology : EGO-EBIsteroid hormone receptor activity  steroid binding  plasma membrane  integral component of membrane  steroid hormone mediated signaling pathway  response to steroid hormone  
NDEx NetworkPAQR9
Atlas of Cancer Signalling NetworkPAQR9
Wikipedia pathwaysPAQR9
Orthology - Evolution
OrthoDB344838
GeneTree (enSembl)ENSG00000188582
Phylogenetic Trees/Animal Genes : TreeFamPAQR9
HOVERGENQ6ZVX9
HOGENOMQ6ZVX9
Homologs : HomoloGenePAQR9
Homology/Alignments : Family Browser (UCSC)PAQR9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPAQR9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PAQR9
dbVarPAQR9
ClinVarPAQR9
1000_GenomesPAQR9 
Exome Variant ServerPAQR9
ExAC (Exome Aggregation Consortium)PAQR9 (select the gene name)
Genetic variants : HAPMAP344838
Genomic Variants (DGV)PAQR9 [DGVbeta]
DECIPHERPAQR9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPAQR9 
Mutations
ICGC Data PortalPAQR9 
TCGA Data PortalPAQR9 
Broad Tumor PortalPAQR9
OASIS PortalPAQR9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPAQR9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPAQR9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PAQR9
DgiDB (Drug Gene Interaction Database)PAQR9
DoCM (Curated mutations)PAQR9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PAQR9 (select a term)
intoGenPAQR9
Cancer3DPAQR9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614580   
Orphanet
MedgenPAQR9
Genetic Testing Registry PAQR9
NextProtQ6ZVX9 [Medical]
TSGene344838
GENETestsPAQR9
Target ValidationPAQR9
Huge Navigator PAQR9 [HugePedia]
snp3D : Map Gene to Disease344838
BioCentury BCIQPAQR9
ClinGenPAQR9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD344838
Chemical/Pharm GKB GenePA134880790
Clinical trialPAQR9
Miscellaneous
canSAR (ICR)PAQR9 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePAQR9
EVEXPAQR9
GoPubMedPAQR9
iHOPPAQR9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:35:31 CEST 2017

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