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PARM1 (prostate androgen-regulated mucin-like protein 1)

Identity

Alias_symbol (synonym)DKFZP564O0823
Cipar1
WSC4
Other aliasPARM-1
HGNC (Hugo) PARM1
LocusID (NCBI) 25849
Atlas_Id 51158
Location 4q13.3  [Link to chromosome band 4q13]
Location_base_pair Starts at 75858285 and ends at 75975325 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
NEMF (14q21.3) / PARM1 (4q13.3)PARM1 (4q13.3) / ITGAV (2q32.1)TAF15 (17q12) / PARM1 (4q13.3)
TMED2 (12q24.31) / PARM1 (4q13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PARM1   24536
Cards
Entrez_Gene (NCBI)PARM1  25849  prostate androgen-regulated mucin-like protein 1
AliasesCipar1; DKFZP564O0823; PARM-1; WSC4
GeneCards (Weizmann)PARM1
Ensembl hg19 (Hinxton)ENSG00000169116 [Gene_View]  chr4:75858285-75975325 [Contig_View]  PARM1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000169116 [Gene_View]  chr4:75858285-75975325 [Contig_View]  PARM1 [Vega]
ICGC DataPortalENSG00000169116
TCGA cBioPortalPARM1
AceView (NCBI)PARM1
Genatlas (Paris)PARM1
WikiGenes25849
SOURCE (Princeton)PARM1
Genetics Home Reference (NIH)PARM1
Genomic and cartography
GoldenPath hg19 (UCSC)PARM1  -     chr4:75858285-75975325 +  4q13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PARM1  -     4q13.3   [Description]    (hg38-Dec_2013)
EnsemblPARM1 - 4q13.3 [CytoView hg19]  PARM1 - 4q13.3 [CytoView hg38]
Mapping of homologs : NCBIPARM1 [Mapview hg19]  PARM1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI767320 AI948471 AK022311 AK025205 AK026200
RefSeq transcript (Entrez)NM_015393
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_016354 NW_004929320
Consensus coding sequences : CCDS (NCBI)PARM1
Cluster EST : UnigeneHs.623905 [ NCBI ]
CGAP (NCI)Hs.623905
Alternative Splicing GalleryENSG00000169116
Gene ExpressionPARM1 [ NCBI-GEO ]   PARM1 [ EBI - ARRAY_EXPRESS ]   PARM1 [ SEEK ]   PARM1 [ MEM ]
Gene Expression Viewer (FireBrowse)PARM1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25849
GTEX Portal (Tissue expression)PARM1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UWI2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UWI2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UWI2
Splice isoforms : SwissVarQ6UWI2
PhosPhoSitePlusQ6UWI2
Domains : Interpro (EBI)PARM1   
Domain families : Pfam (Sanger)PARM (PF17061)   
Domain families : Pfam (NCBI)pfam17061   
Conserved Domain (NCBI)PARM1
DMDM Disease mutations25849
Blocks (Seattle)PARM1
SuperfamilyQ6UWI2
Human Protein AtlasENSG00000169116
Peptide AtlasQ6UWI2
HPRD08529
IPIIPI00294910   IPI00966814   
Protein Interaction databases
DIP (DOE-UCLA)Q6UWI2
IntAct (EBI)Q6UWI2
FunCoupENSG00000169116
BioGRIDPARM1
STRING (EMBL)PARM1
ZODIACPARM1
Ontologies - Pathways
QuickGOQ6UWI2
Ontology : AmiGOGolgi membrane  nucleus  cytoplasm  early endosome  late endosome  Golgi apparatus  plasma membrane  endosome membrane  integral component of membrane  intracellular membrane-bounded organelle  positive regulation of telomerase activity  
Ontology : EGO-EBIGolgi membrane  nucleus  cytoplasm  early endosome  late endosome  Golgi apparatus  plasma membrane  endosome membrane  integral component of membrane  intracellular membrane-bounded organelle  positive regulation of telomerase activity  
NDEx NetworkPARM1
Atlas of Cancer Signalling NetworkPARM1
Wikipedia pathwaysPARM1
Orthology - Evolution
OrthoDB25849
GeneTree (enSembl)ENSG00000169116
Phylogenetic Trees/Animal Genes : TreeFamPARM1
HOVERGENQ6UWI2
HOGENOMQ6UWI2
Homologs : HomoloGenePARM1
Homology/Alignments : Family Browser (UCSC)PARM1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPARM1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PARM1
dbVarPARM1
ClinVarPARM1
1000_GenomesPARM1 
Exome Variant ServerPARM1
ExAC (Exome Aggregation Consortium)PARM1 (select the gene name)
Genetic variants : HAPMAP25849
Genomic Variants (DGV)PARM1 [DGVbeta]
DECIPHER (Syndromes)4:75858285-75975325  ENSG00000169116
CONAN: Copy Number AnalysisPARM1 
Mutations
ICGC Data PortalPARM1 
TCGA Data PortalPARM1 
Broad Tumor PortalPARM1
OASIS PortalPARM1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPARM1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPARM1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PARM1
DgiDB (Drug Gene Interaction Database)PARM1
DoCM (Curated mutations)PARM1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PARM1 (select a term)
intoGenPARM1
Cancer3DPARM1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPARM1
Genetic Testing Registry PARM1
NextProtQ6UWI2 [Medical]
TSGene25849
GENETestsPARM1
Huge Navigator PARM1 [HugePedia]
snp3D : Map Gene to Disease25849
BioCentury BCIQPARM1
ClinGenPARM1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25849
Chemical/Pharm GKB GenePA165664393
Clinical trialPARM1
Miscellaneous
canSAR (ICR)PARM1 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePARM1
EVEXPARM1
GoPubMedPARM1
iHOPPARM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:13:32 CEST 2017

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