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PARP11 (poly(ADP-ribose) polymerase family member 11)

Identity

Alias_namesC12orf6
chromosome 12 open reading frame 6
Other aliasARTD11
MIB006
HGNC (Hugo) PARP11
LocusID (NCBI) 57097
Atlas_Id 71668
Location 12p13.32  [Link to chromosome band 12p13]
Location_base_pair Starts at 3808861 and ends at 3873448 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
USP54 (10q22.2) / PARP11 (12p13.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PARP11   1186
Cards
Entrez_Gene (NCBI)PARP11  57097  poly(ADP-ribose) polymerase family member 11
AliasesARTD11; C12orf6; MIB006
GeneCards (Weizmann)PARP11
Ensembl hg19 (Hinxton)ENSG00000111224 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000111224 [Gene_View]  chr12:3808861-3873448 [Contig_View]  PARP11 [Vega]
ICGC DataPortalENSG00000111224
TCGA cBioPortalPARP11
AceView (NCBI)PARP11
Genatlas (Paris)PARP11
WikiGenes57097
SOURCE (Princeton)PARP11
Genetics Home Reference (NIH)PARP11
Genomic and cartography
GoldenPath hg38 (UCSC)PARP11  -     chr12:3808861-3873448 -  12p13.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PARP11  -     12p13.32   [Description]    (hg19-Feb_2009)
EnsemblPARP11 - 12p13.32 [CytoView hg19]  PARP11 - 12p13.32 [CytoView hg38]
Mapping of homologs : NCBIPARP11 [Mapview hg19]  PARP11 [Mapview hg38]
OMIM616706   
Gene and transcription
Genbank (Entrez)AF263540 AK096373 AK299372 AK314916 BC017569
RefSeq transcript (Entrez)NM_001286521 NM_001286522 NM_020367
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PARP11
Cluster EST : UnigeneHs.657268 [ NCBI ]
CGAP (NCI)Hs.657268
Alternative Splicing GalleryENSG00000111224
Gene ExpressionPARP11 [ NCBI-GEO ]   PARP11 [ EBI - ARRAY_EXPRESS ]   PARP11 [ SEEK ]   PARP11 [ MEM ]
Gene Expression Viewer (FireBrowse)PARP11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57097
GTEX Portal (Tissue expression)PARP11
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NR21   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NR21  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NR21
Splice isoforms : SwissVarQ9NR21
Catalytic activity : Enzyme2.4.2.30 [ Enzyme-Expasy ]   2.4.2.302.4.2.30 [ IntEnz-EBI ]   2.4.2.30 [ BRENDA ]   2.4.2.30 [ KEGG ]   
PhosPhoSitePlusQ9NR21
Domaine pattern : Prosite (Expaxy)PARP_CATALYTIC (PS51059)    WWE (PS50918)   
Domains : Interpro (EBI)Poly(ADP-ribose)pol_cat_dom    WWE-dom   
Domain families : Pfam (Sanger)PARP (PF00644)    WWE (PF02825)   
Domain families : Pfam (NCBI)pfam00644    pfam02825   
Conserved Domain (NCBI)PARP11
DMDM Disease mutations57097
Blocks (Seattle)PARP11
PDB (SRS)2DK6   
PDB (PDBSum)2DK6   
PDB (IMB)2DK6   
PDB (RSDB)2DK6   
Structural Biology KnowledgeBase2DK6   
SCOP (Structural Classification of Proteins)2DK6   
CATH (Classification of proteins structures)2DK6   
SuperfamilyQ9NR21
Human Protein AtlasENSG00000111224
Peptide AtlasQ9NR21
HPRD15101
IPIIPI00006899   IPI00925450   IPI00793807   IPI01026175   IPI00794370   IPI01026272   IPI00926852   IPI01015159   
Protein Interaction databases
DIP (DOE-UCLA)Q9NR21
IntAct (EBI)Q9NR21
FunCoupENSG00000111224
BioGRIDPARP11
STRING (EMBL)PARP11
ZODIACPARP11
Ontologies - Pathways
QuickGOQ9NR21
Ontology : AmiGONAD+ ADP-ribosyltransferase activity  protein binding  nuclear envelope  nuclear pore  nuclear envelope organization  spermatogenesis  protein transport  cell differentiation  mRNA transport  
Ontology : EGO-EBINAD+ ADP-ribosyltransferase activity  protein binding  nuclear envelope  nuclear pore  nuclear envelope organization  spermatogenesis  protein transport  cell differentiation  mRNA transport  
NDEx NetworkPARP11
Atlas of Cancer Signalling NetworkPARP11
Wikipedia pathwaysPARP11
Orthology - Evolution
OrthoDB57097
GeneTree (enSembl)ENSG00000111224
Phylogenetic Trees/Animal Genes : TreeFamPARP11
HOVERGENQ9NR21
HOGENOMQ9NR21
Homologs : HomoloGenePARP11
Homology/Alignments : Family Browser (UCSC)PARP11
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPARP11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PARP11
dbVarPARP11
ClinVarPARP11
1000_GenomesPARP11 
Exome Variant ServerPARP11
ExAC (Exome Aggregation Consortium)PARP11 (select the gene name)
Genetic variants : HAPMAP57097
Genomic Variants (DGV)PARP11 [DGVbeta]
DECIPHERPARP11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPARP11 
Mutations
ICGC Data PortalPARP11 
TCGA Data PortalPARP11 
Broad Tumor PortalPARP11
OASIS PortalPARP11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPARP11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPARP11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PARP11
DgiDB (Drug Gene Interaction Database)PARP11
DoCM (Curated mutations)PARP11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PARP11 (select a term)
intoGenPARP11
Cancer3DPARP11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616706   
Orphanet
MedgenPARP11
Genetic Testing Registry PARP11
NextProtQ9NR21 [Medical]
TSGene57097
GENETestsPARP11
Huge Navigator PARP11 [HugePedia]
snp3D : Map Gene to Disease57097
BioCentury BCIQPARP11
ClinGenPARP11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57097
Chemical/Pharm GKB GenePA25507
Clinical trialPARP11
Miscellaneous
canSAR (ICR)PARP11 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePARP11
EVEXPARP11
GoPubMedPARP11
iHOPPARP11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:47:48 CEST 2017

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