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PARP9 (poly(ADP-ribose) polymerase family member 9)

Identity

Alias_symbol (synonym)BAL
BAL1
Other aliasARTD9
MGC:7868
HGNC (Hugo) PARP9
LocusID (NCBI) 83666
Atlas_Id 753
Location 3q21.1  [Link to chromosome band 3q21]
Location_base_pair Starts at 122246760 and ends at 122283147 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PIM3 (22q13.33) / PARP9 (3q21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PARP9   24118
Cards
Entrez_Gene (NCBI)PARP9  83666  poly(ADP-ribose) polymerase family member 9
AliasesARTD9; BAL; BAL1; MGC:7868
GeneCards (Weizmann)PARP9
Ensembl hg19 (Hinxton)ENSG00000138496 [Gene_View]  chr3:122246760-122283147 [Contig_View]  PARP9 [Vega]
Ensembl hg38 (Hinxton)ENSG00000138496 [Gene_View]  chr3:122246760-122283147 [Contig_View]  PARP9 [Vega]
ICGC DataPortalENSG00000138496
TCGA cBioPortalPARP9
AceView (NCBI)PARP9
Genatlas (Paris)PARP9
WikiGenes83666
SOURCE (Princeton)PARP9
Genetics Home Reference (NIH)PARP9
Genomic and cartography
GoldenPath hg19 (UCSC)PARP9  -     chr3:122246760-122283147 -  3q21.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PARP9  -     3q21.1   [Description]    (hg38-Dec_2013)
EnsemblPARP9 - 3q21.1 [CytoView hg19]  PARP9 - 3q21.1 [CytoView hg38]
Mapping of homologs : NCBIPARP9 [Mapview hg19]  PARP9 [Mapview hg38]
OMIM612065   
Gene and transcription
Genbank (Entrez)AB209742 AF307338 AF307339 AK092629 AK123412
RefSeq transcript (Entrez)NM_001146102 NM_001146103 NM_001146104 NM_001146105 NM_001146106 NM_031458
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)PARP9
Cluster EST : UnigeneHs.518200 [ NCBI ]
CGAP (NCI)Hs.518200
Alternative Splicing GalleryENSG00000138496
Gene ExpressionPARP9 [ NCBI-GEO ]   PARP9 [ EBI - ARRAY_EXPRESS ]   PARP9 [ SEEK ]   PARP9 [ MEM ]
Gene Expression Viewer (FireBrowse)PARP9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83666
GTEX Portal (Tissue expression)PARP9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IXQ6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IXQ6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IXQ6
Splice isoforms : SwissVarQ8IXQ6
Catalytic activity : Enzyme2.4.2.30 [ Enzyme-Expasy ]   2.4.2.302.4.2.30 [ IntEnz-EBI ]   2.4.2.30 [ BRENDA ]   2.4.2.30 [ KEGG ]   
PhosPhoSitePlusQ8IXQ6
Domaine pattern : Prosite (Expaxy)MACRO (PS51154)    PARP_CATALYTIC (PS51059)   
Domains : Interpro (EBI)Macro_dom    Poly(ADP-ribose)pol_cat_dom   
Domain families : Pfam (Sanger)Macro (PF01661)   
Domain families : Pfam (NCBI)pfam01661   
Domain families : Smart (EMBL)A1pp (SM00506)  
Conserved Domain (NCBI)PARP9
DMDM Disease mutations83666
Blocks (Seattle)PARP9
PDB (SRS)5AIL   
PDB (PDBSum)5AIL   
PDB (IMB)5AIL   
PDB (RSDB)5AIL   
Structural Biology KnowledgeBase5AIL   
SCOP (Structural Classification of Proteins)5AIL   
CATH (Classification of proteins structures)5AIL   
SuperfamilyQ8IXQ6
Human Protein AtlasENSG00000138496
Peptide AtlasQ8IXQ6
HPRD10686
IPIIPI00027803   IPI00377267   IPI00792517   IPI00978490   IPI00945275   
Protein Interaction databases
DIP (DOE-UCLA)Q8IXQ6
IntAct (EBI)Q8IXQ6
FunCoupENSG00000138496
BioGRIDPARP9
STRING (EMBL)PARP9
ZODIACPARP9
Ontologies - Pathways
QuickGOQ8IXQ6
Ontology : AmiGONAD+ ADP-ribosyltransferase activity  protein binding  nucleus  nucleus  nucleoplasm  cytoplasm  mitochondrion  cytosol  double-strand break repair  membrane  cell migration  regulation of response to interferon-gamma  
Ontology : EGO-EBINAD+ ADP-ribosyltransferase activity  protein binding  nucleus  nucleus  nucleoplasm  cytoplasm  mitochondrion  cytosol  double-strand break repair  membrane  cell migration  regulation of response to interferon-gamma  
NDEx NetworkPARP9
Atlas of Cancer Signalling NetworkPARP9
Wikipedia pathwaysPARP9
Orthology - Evolution
OrthoDB83666
GeneTree (enSembl)ENSG00000138496
Phylogenetic Trees/Animal Genes : TreeFamPARP9
HOVERGENQ8IXQ6
HOGENOMQ8IXQ6
Homologs : HomoloGenePARP9
Homology/Alignments : Family Browser (UCSC)PARP9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPARP9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PARP9
dbVarPARP9
ClinVarPARP9
1000_GenomesPARP9 
Exome Variant ServerPARP9
ExAC (Exome Aggregation Consortium)PARP9 (select the gene name)
Genetic variants : HAPMAP83666
Genomic Variants (DGV)PARP9 [DGVbeta]
DECIPHER (Syndromes)3:122246760-122283147  ENSG00000138496
CONAN: Copy Number AnalysisPARP9 
Mutations
ICGC Data PortalPARP9 
TCGA Data PortalPARP9 
Broad Tumor PortalPARP9
OASIS PortalPARP9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPARP9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPARP9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PARP9
DgiDB (Drug Gene Interaction Database)PARP9
DoCM (Curated mutations)PARP9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PARP9 (select a term)
intoGenPARP9
Cancer3DPARP9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612065   
Orphanet
MedgenPARP9
Genetic Testing Registry PARP9
NextProtQ8IXQ6 [Medical]
TSGene83666
GENETestsPARP9
Huge Navigator PARP9 [HugePedia]
snp3D : Map Gene to Disease83666
BioCentury BCIQPARP9
ClinGenPARP9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83666
Chemical/Pharm GKB GenePA134870403
Clinical trialPARP9
Miscellaneous
canSAR (ICR)PARP9 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePARP9
EVEXPARP9
GoPubMedPARP9
iHOPPARP9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:13:34 CEST 2017

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