Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PART1 (prostate androgen-regulated transcript 1 (non-protein coding))

Identity

Alias_symbol (synonym)DKFZP586D0823
NCRNA00206
Other alias
HGNC (Hugo) PART1
LocusID (NCBI) 25859
Atlas_Id 41640
Location 5q12.1  [Link to chromosome band 5q12]
Location_base_pair Starts at 59819923 and ends at 59822245 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PART1 (5q12.1) / MALAT1 (11q13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PART1   17263
Cards
Entrez_Gene (NCBI)PART1  25859  prostate androgen-regulated transcript 1 (non-protein coding)
AliasesNCRNA00206
GeneCards (Weizmann)PART1
Ensembl hg19 (Hinxton)ENSG00000152931 [Gene_View]  chr5:59819923-59822245 [Contig_View]  PART1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000152931 [Gene_View]  chr5:59819923-59822245 [Contig_View]  PART1 [Vega]
ICGC DataPortalENSG00000152931
TCGA cBioPortalPART1
AceView (NCBI)PART1
Genatlas (Paris)PART1
WikiGenes25859
SOURCE (Princeton)PART1
Genetics Home Reference (NIH)PART1
Genomic and cartography
GoldenPath hg19 (UCSC)PART1  -     chr5:59819923-59822245 +  5q12.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PART1  -     5q12.1   [Description]    (hg38-Dec_2013)
EnsemblPART1 - 5q12.1 [CytoView hg19]  PART1 - 5q12.1 [CytoView hg38]
Mapping of homologs : NCBIPART1 [Mapview hg19]  PART1 [Mapview hg38]
OMIM604991   
Gene and transcription
Genbank (Entrez)AF070547 AF163475 AK094518 AK095768 AK312071
RefSeq transcript (Entrez)NM_001039499 NM_001040639
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_034772 NW_004929322
Consensus coding sequences : CCDS (NCBI)PART1
Cluster EST : UnigeneHs.146312 [ NCBI ]
CGAP (NCI)Hs.146312
Alternative Splicing GalleryENSG00000152931
Gene ExpressionPART1 [ NCBI-GEO ]   PART1 [ EBI - ARRAY_EXPRESS ]   PART1 [ SEEK ]   PART1 [ MEM ]
Gene Expression Viewer (FireBrowse)PART1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)25859
GTEX Portal (Tissue expression)PART1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PART1
DMDM Disease mutations25859
Blocks (Seattle)PART1
Human Protein AtlasENSG00000152931
HPRD09230
IPIIPI00975527   
Protein Interaction databases
FunCoupENSG00000152931
BioGRIDPART1
STRING (EMBL)PART1
ZODIACPART1
Ontologies - Pathways
Huge Navigator PART1 [HugePedia]
snp3D : Map Gene to Disease25859
BioCentury BCIQPART1
ClinGenPART1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25859
Chemical/Pharm GKB GenePA165660422
Clinical trialPART1
Miscellaneous
canSAR (ICR)PART1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePART1
EVEXPART1
GoPubMedPART1
iHOPPART1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:13:34 CEST 2017

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