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PATE1 (prostate and testis expressed 1)

Identity

Alias_symbol (synonym)PATE
Other alias
HGNC (Hugo) PATE1
LocusID (NCBI) 160065
Atlas_Id 56496
Location 11q24.2  [Link to chromosome band 11q24]
Location_base_pair Starts at 125746293 and ends at 125749848 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PATE1   24664
Cards
Entrez_Gene (NCBI)PATE1  160065  prostate and testis expressed 1
AliasesPATE
GeneCards (Weizmann)PATE1
Ensembl hg19 (Hinxton)ENSG00000171053 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171053 [Gene_View]  chr11:125746293-125749848 [Contig_View]  PATE1 [Vega]
ICGC DataPortalENSG00000171053
TCGA cBioPortalPATE1
AceView (NCBI)PATE1
Genatlas (Paris)PATE1
WikiGenes160065
SOURCE (Princeton)PATE1
Genetics Home Reference (NIH)PATE1
Genomic and cartography
GoldenPath hg38 (UCSC)PATE1  -     chr11:125746293-125749848 +  11q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PATE1  -     11q24.2   [Description]    (hg19-Feb_2009)
EnsemblPATE1 - 11q24.2 [CytoView hg19]  PATE1 - 11q24.2 [CytoView hg38]
Mapping of homologs : NCBIPATE1 [Mapview hg19]  PATE1 [Mapview hg38]
OMIM606861   
Gene and transcription
Genbank (Entrez)AF462605 BC039863 BC107044
RefSeq transcript (Entrez)NM_138294
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PATE1
Cluster EST : UnigeneHs.148565 [ NCBI ]
CGAP (NCI)Hs.148565
Alternative Splicing GalleryENSG00000171053
Gene ExpressionPATE1 [ NCBI-GEO ]   PATE1 [ EBI - ARRAY_EXPRESS ]   PATE1 [ SEEK ]   PATE1 [ MEM ]
Gene Expression Viewer (FireBrowse)PATE1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)160065
GTEX Portal (Tissue expression)PATE1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WXA2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WXA2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WXA2
Splice isoforms : SwissVarQ8WXA2
PhosPhoSitePlusQ8WXA2
Domains : Interpro (EBI)PATE1   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PATE1
DMDM Disease mutations160065
Blocks (Seattle)PATE1
SuperfamilyQ8WXA2
Human Protein AtlasENSG00000171053
Peptide AtlasQ8WXA2
HPRD06034
IPIIPI00103495   IPI00885140   
Protein Interaction databases
DIP (DOE-UCLA)Q8WXA2
IntAct (EBI)Q8WXA2
FunCoupENSG00000171053
BioGRIDPATE1
STRING (EMBL)PATE1
ZODIACPATE1
Ontologies - Pathways
QuickGOQ8WXA2
Ontology : AmiGOprotein binding  extracellular region  
Ontology : EGO-EBIprotein binding  extracellular region  
NDEx NetworkPATE1
Atlas of Cancer Signalling NetworkPATE1
Wikipedia pathwaysPATE1
Orthology - Evolution
OrthoDB160065
GeneTree (enSembl)ENSG00000171053
Phylogenetic Trees/Animal Genes : TreeFamPATE1
HOVERGENQ8WXA2
HOGENOMQ8WXA2
Homologs : HomoloGenePATE1
Homology/Alignments : Family Browser (UCSC)PATE1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPATE1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PATE1
dbVarPATE1
ClinVarPATE1
1000_GenomesPATE1 
Exome Variant ServerPATE1
ExAC (Exome Aggregation Consortium)PATE1 (select the gene name)
Genetic variants : HAPMAP160065
Genomic Variants (DGV)PATE1 [DGVbeta]
DECIPHERPATE1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPATE1 
Mutations
ICGC Data PortalPATE1 
TCGA Data PortalPATE1 
Broad Tumor PortalPATE1
OASIS PortalPATE1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPATE1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPATE1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PATE1
DgiDB (Drug Gene Interaction Database)PATE1
DoCM (Curated mutations)PATE1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PATE1 (select a term)
intoGenPATE1
Cancer3DPATE1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606861   
Orphanet
MedgenPATE1
Genetic Testing Registry PATE1
NextProtQ8WXA2 [Medical]
TSGene160065
GENETestsPATE1
Target ValidationPATE1
Huge Navigator PATE1 [HugePedia]
snp3D : Map Gene to Disease160065
BioCentury BCIQPATE1
ClinGenPATE1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD160065
Chemical/Pharm GKB GenePA164724368
Clinical trialPATE1
Miscellaneous
canSAR (ICR)PATE1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePATE1
EVEXPATE1
GoPubMedPATE1
iHOPPATE1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:02:42 CEST 2017

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