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PATE2 (prostate and testis expressed 2)

Identity

Alias_namesC11orf38
chromosome 11 open reading frame 38
Alias_symbol (synonym)UNQ3112
LVLF3112
PATE-M
Other alias
HGNC (Hugo) PATE2
LocusID (NCBI) 399967
Atlas_Id 56363
Location 11q24.2  [Link to chromosome band 11q24]
Location_base_pair Starts at 125646028 and ends at 125648714 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PATE2   32249
Cards
Entrez_Gene (NCBI)PATE2  399967  prostate and testis expressed 2
AliasesC11orf38; PATE-M; UNQ3112
GeneCards (Weizmann)PATE2
Ensembl hg19 (Hinxton)ENSG00000196844 [Gene_View]  chr11:125646028-125648714 [Contig_View]  PATE2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000196844 [Gene_View]  chr11:125646028-125648714 [Contig_View]  PATE2 [Vega]
ICGC DataPortalENSG00000196844
TCGA cBioPortalPATE2
AceView (NCBI)PATE2
Genatlas (Paris)PATE2
WikiGenes399967
SOURCE (Princeton)PATE2
Genetics Home Reference (NIH)PATE2
Genomic and cartography
GoldenPath hg19 (UCSC)PATE2  -     chr11:125646028-125648714 -  11q24.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PATE2  -     11q24.2   [Description]    (hg38-Dec_2013)
EnsemblPATE2 - 11q24.2 [CytoView hg19]  PATE2 - 11q24.2 [CytoView hg38]
Mapping of homologs : NCBIPATE2 [Mapview hg19]  PATE2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_212555
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PATE2
Cluster EST : UnigeneHs.369185 [ NCBI ]
CGAP (NCI)Hs.369185
Alternative Splicing GalleryENSG00000196844
Gene ExpressionPATE2 [ NCBI-GEO ]   PATE2 [ EBI - ARRAY_EXPRESS ]   PATE2 [ SEEK ]   PATE2 [ MEM ]
Gene Expression Viewer (FireBrowse)PATE2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)399967
GTEX Portal (Tissue expression)PATE2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UY27   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UY27  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UY27
Splice isoforms : SwissVarQ6UY27
PhosPhoSitePlusQ6UY27
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PATE2
DMDM Disease mutations399967
Blocks (Seattle)PATE2
SuperfamilyQ6UY27
Human Protein AtlasENSG00000196844
Peptide AtlasQ6UY27
HPRD15617
IPIIPI00249971   IPI00914907   
Protein Interaction databases
DIP (DOE-UCLA)Q6UY27
IntAct (EBI)Q6UY27
FunCoupENSG00000196844
BioGRIDPATE2
STRING (EMBL)PATE2
ZODIACPATE2
Ontologies - Pathways
QuickGOQ6UY27
Ontology : AmiGOextracellular space  
Ontology : EGO-EBIextracellular space  
NDEx NetworkPATE2
Atlas of Cancer Signalling NetworkPATE2
Wikipedia pathwaysPATE2
Orthology - Evolution
OrthoDB399967
GeneTree (enSembl)ENSG00000196844
Phylogenetic Trees/Animal Genes : TreeFamPATE2
HOVERGENQ6UY27
HOGENOMQ6UY27
Homologs : HomoloGenePATE2
Homology/Alignments : Family Browser (UCSC)PATE2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPATE2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PATE2
dbVarPATE2
ClinVarPATE2
1000_GenomesPATE2 
Exome Variant ServerPATE2
ExAC (Exome Aggregation Consortium)PATE2 (select the gene name)
Genetic variants : HAPMAP399967
Genomic Variants (DGV)PATE2 [DGVbeta]
DECIPHER (Syndromes)11:125646028-125648714  ENSG00000196844
CONAN: Copy Number AnalysisPATE2 
Mutations
ICGC Data PortalPATE2 
TCGA Data PortalPATE2 
Broad Tumor PortalPATE2
OASIS PortalPATE2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPATE2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPATE2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PATE2
DgiDB (Drug Gene Interaction Database)PATE2
DoCM (Curated mutations)PATE2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PATE2 (select a term)
intoGenPATE2
Cancer3DPATE2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPATE2
Genetic Testing Registry PATE2
NextProtQ6UY27 [Medical]
TSGene399967
GENETestsPATE2
Huge Navigator PATE2 [HugePedia]
snp3D : Map Gene to Disease399967
BioCentury BCIQPATE2
ClinGenPATE2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD399967
Chemical/Pharm GKB GenePA164724383
Clinical trialPATE2
Miscellaneous
canSAR (ICR)PATE2 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePATE2
EVEXPATE2
GoPubMedPATE2
iHOPPATE2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:13:35 CEST 2017

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