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PATE3 (prostate and testis expressed 3)

Identity

Alias (NCBI)HEL-127
PATE-DJ
HGNC (Hugo) PATE3
HGNC Alias symbPATE-DJ
HEL-127
LocusID (NCBI) 100169851
Atlas_Id 71676
Location 11q24.2  [Link to chromosome band 11q24]
Location_base_pair Starts at 125788111 and ends at 125791600 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ADCY9 (16p13.3) / PATE3 (11q24.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)PATE3   35426
Cards
Entrez_Gene (NCBI)PATE3    prostate and testis expressed 3
AliasesHEL-127; PATE-DJ
GeneCards (Weizmann)PATE3
Ensembl hg19 (Hinxton)ENSG00000236027 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000236027 [Gene_View]  ENSG00000236027 [Sequence]  chr11:125788111-125791600 [Contig_View]  PATE3 [Vega]
ICGC DataPortalENSG00000236027
TCGA cBioPortalPATE3
AceView (NCBI)PATE3
Genatlas (Paris)PATE3
SOURCE (Princeton)PATE3
Genetics Home Reference (NIH)PATE3
Genomic and cartography
GoldenPath hg38 (UCSC)PATE3  -     chr11:125788111-125791600 +  11q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PATE3  -     11q24.2   [Description]    (hg19-Feb_2009)
GoldenPathPATE3 - 11q24.2 [CytoView hg19]  PATE3 - 11q24.2 [CytoView hg38]
ImmunoBaseENSG00000236027
genome Data Viewer NCBIPATE3 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)EF426753 EU703625
RefSeq transcript (Entrez)NM_001129883
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PATE3
Alternative Splicing GalleryENSG00000236027
Gene ExpressionPATE3 [ NCBI-GEO ]   PATE3 [ EBI - ARRAY_EXPRESS ]   PATE3 [ SEEK ]   PATE3 [ MEM ]
Gene Expression Viewer (FireBrowse)PATE3 [ Firebrowse - Broad ]
GenevisibleExpression of PATE3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100169851
GTEX Portal (Tissue expression)PATE3
Human Protein AtlasENSG00000236027-PATE3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtB3GLJ2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtB3GLJ2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProB3GLJ2
Splice isoforms : SwissVarB3GLJ2
PhosPhoSitePlusB3GLJ2
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PATE3
Blocks (Seattle)PATE3
SuperfamilyB3GLJ2
Human Protein Atlas [tissue]ENSG00000236027-PATE3 [tissue]
Peptide AtlasB3GLJ2
IPIIPI00900258   
Protein Interaction databases
DIP (DOE-UCLA)B3GLJ2
IntAct (EBI)B3GLJ2
BioGRIDPATE3
STRING (EMBL)PATE3
ZODIACPATE3
Ontologies - Pathways
QuickGOB3GLJ2
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkPATE3
Atlas of Cancer Signalling NetworkPATE3
Wikipedia pathwaysPATE3
Orthology - Evolution
OrthoDB100169851
GeneTree (enSembl)ENSG00000236027
Phylogenetic Trees/Animal Genes : TreeFamPATE3
HOGENOMB3GLJ2
Homologs : HomoloGenePATE3
Homology/Alignments : Family Browser (UCSC)PATE3
Gene fusions - Rearrangements
Fusion : QuiverPATE3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPATE3 [hg38]
dbVarPATE3
ClinVarPATE3
MonarchPATE3
1000_GenomesPATE3 
Exome Variant ServerPATE3
GNOMAD BrowserENSG00000236027
Varsome BrowserPATE3
Genomic Variants (DGV)PATE3 [DGVbeta]
DECIPHERPATE3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPATE3 
Mutations
ICGC Data PortalPATE3 
TCGA Data PortalPATE3 
Broad Tumor PortalPATE3
OASIS PortalPATE3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPATE3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DPATE3
Mutations and Diseases : HGMDPATE3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PATE3
DgiDB (Drug Gene Interaction Database)PATE3
DoCM (Curated mutations)PATE3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PATE3 (select a term)
intoGenPATE3
Cancer3DPATE3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETPATE3
MedgenPATE3
Genetic Testing Registry PATE3
NextProtB3GLJ2 [Medical]
GENETestsPATE3
Target ValidationPATE3
Huge Navigator PATE3 [HugePedia]
ClinGenPATE3
Clinical trials, drugs, therapy
MyCancerGenomePATE3
Protein Interactions : CTD
Pharm GKB GenePA164724396
Clinical trialPATE3
Miscellaneous
canSAR (ICR)PATE3 (select the gene name)
HarmonizomePATE3
DataMed IndexPATE3
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePATE3
EVEXPATE3
GoPubMedPATE3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:21:51 CET 2020

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