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PATE3 (prostate and testis expressed 3)

Identity

Alias_symbol (synonym)PATE-DJ
HEL-127
Other alias
HGNC (Hugo) PATE3
LocusID (NCBI) 100169851
Atlas_Id 71676
Location 11q24.2  [Link to chromosome band 11q24]
Location_base_pair Starts at 125788111 and ends at 125791600 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ADCY9 (16p13.3) / PATE3 (11q24.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PATE3   35426
Cards
Entrez_Gene (NCBI)PATE3  100169851  prostate and testis expressed 3
AliasesHEL-127; PATE-DJ
GeneCards (Weizmann)PATE3
Ensembl hg19 (Hinxton)ENSG00000236027 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000236027 [Gene_View]  chr11:125788111-125791600 [Contig_View]  PATE3 [Vega]
ICGC DataPortalENSG00000236027
TCGA cBioPortalPATE3
AceView (NCBI)PATE3
Genatlas (Paris)PATE3
WikiGenes100169851
SOURCE (Princeton)PATE3
Genetics Home Reference (NIH)PATE3
Genomic and cartography
GoldenPath hg38 (UCSC)PATE3  -     chr11:125788111-125791600 +  11q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PATE3  -     11q24.2   [Description]    (hg19-Feb_2009)
EnsemblPATE3 - 11q24.2 [CytoView hg19]  PATE3 - 11q24.2 [CytoView hg38]
Mapping of homologs : NCBIPATE3 [Mapview hg19]  PATE3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)EF426753 EU703625
RefSeq transcript (Entrez)NM_001129883
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PATE3
Cluster EST : UnigeneHs.131278 [ NCBI ]
CGAP (NCI)Hs.131278
Alternative Splicing GalleryENSG00000236027
Gene ExpressionPATE3 [ NCBI-GEO ]   PATE3 [ EBI - ARRAY_EXPRESS ]   PATE3 [ SEEK ]   PATE3 [ MEM ]
Gene Expression Viewer (FireBrowse)PATE3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100169851
GTEX Portal (Tissue expression)PATE3
Protein : pattern, domain, 3D structure
UniProt/SwissProtB3GLJ2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtB3GLJ2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProB3GLJ2
Splice isoforms : SwissVarB3GLJ2
PhosPhoSitePlusB3GLJ2
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PATE3
DMDM Disease mutations100169851
Blocks (Seattle)PATE3
SuperfamilyB3GLJ2
Human Protein AtlasENSG00000236027
Peptide AtlasB3GLJ2
IPIIPI00900258   
Protein Interaction databases
DIP (DOE-UCLA)B3GLJ2
IntAct (EBI)B3GLJ2
FunCoupENSG00000236027
BioGRIDPATE3
STRING (EMBL)PATE3
ZODIACPATE3
Ontologies - Pathways
QuickGOB3GLJ2
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkPATE3
Atlas of Cancer Signalling NetworkPATE3
Wikipedia pathwaysPATE3
Orthology - Evolution
OrthoDB100169851
GeneTree (enSembl)ENSG00000236027
Phylogenetic Trees/Animal Genes : TreeFamPATE3
HOVERGENB3GLJ2
HOGENOMB3GLJ2
Homologs : HomoloGenePATE3
Homology/Alignments : Family Browser (UCSC)PATE3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPATE3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PATE3
dbVarPATE3
ClinVarPATE3
1000_GenomesPATE3 
Exome Variant ServerPATE3
ExAC (Exome Aggregation Consortium)PATE3 (select the gene name)
Genetic variants : HAPMAP100169851
Genomic Variants (DGV)PATE3 [DGVbeta]
DECIPHERPATE3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPATE3 
Mutations
ICGC Data PortalPATE3 
TCGA Data PortalPATE3 
Broad Tumor PortalPATE3
OASIS PortalPATE3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPATE3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPATE3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PATE3
DgiDB (Drug Gene Interaction Database)PATE3
DoCM (Curated mutations)PATE3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PATE3 (select a term)
intoGenPATE3
Cancer3DPATE3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPATE3
Genetic Testing Registry PATE3
NextProtB3GLJ2 [Medical]
TSGene100169851
GENETestsPATE3
Target ValidationPATE3
Huge Navigator PATE3 [HugePedia]
snp3D : Map Gene to Disease100169851
BioCentury BCIQPATE3
ClinGenPATE3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100169851
Chemical/Pharm GKB GenePA164724396
Clinical trialPATE3
Miscellaneous
canSAR (ICR)PATE3 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePATE3
EVEXPATE3
GoPubMedPATE3
iHOPPATE3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:35:34 CEST 2017

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