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PATE4 (prostate and testis expressed 4)

Identity

Alias_symbol (synonym)FLJ41047
PATE-B
Other alias
HGNC (Hugo) PATE4
LocusID (NCBI) 399968
Atlas_Id 56160
Location 11q24.2  [Link to chromosome band 11q24]
Location_base_pair Starts at 125833316 and ends at 125840072 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PATE4   35427
Cards
Entrez_Gene (NCBI)PATE4  399968  prostate and testis expressed 4
AliasesPATE-B
GeneCards (Weizmann)PATE4
Ensembl hg19 (Hinxton)ENSG00000237353 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000237353 [Gene_View]  chr11:125833316-125840072 [Contig_View]  PATE4 [Vega]
ICGC DataPortalENSG00000237353
TCGA cBioPortalPATE4
AceView (NCBI)PATE4
Genatlas (Paris)PATE4
WikiGenes399968
SOURCE (Princeton)PATE4
Genetics Home Reference (NIH)PATE4
Genomic and cartography
GoldenPath hg38 (UCSC)PATE4  -     chr11:125833316-125840072 +  11q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PATE4  -     11q24.2   [Description]    (hg19-Feb_2009)
EnsemblPATE4 - 11q24.2 [CytoView hg19]  PATE4 - 11q24.2 [CytoView hg38]
Mapping of homologs : NCBIPATE4 [Mapview hg19]  PATE4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI674374 AK123042 AK309978 AK311509 AW296313
RefSeq transcript (Entrez)NM_001144874
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PATE4
Cluster EST : UnigeneHs.436215 [ NCBI ]
CGAP (NCI)Hs.436215
Alternative Splicing GalleryENSG00000237353
Gene ExpressionPATE4 [ NCBI-GEO ]   PATE4 [ EBI - ARRAY_EXPRESS ]   PATE4 [ SEEK ]   PATE4 [ MEM ]
Gene Expression Viewer (FireBrowse)PATE4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)399968
GTEX Portal (Tissue expression)PATE4
Human Protein AtlasENSG00000237353-PATE4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C8F1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C8F1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C8F1
Splice isoforms : SwissVarP0C8F1
PhosPhoSitePlusP0C8F1
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PATE4
DMDM Disease mutations399968
Blocks (Seattle)PATE4
SuperfamilyP0C8F1
Human Protein Atlas [tissue]ENSG00000237353-PATE4 [tissue]
Peptide AtlasP0C8F1
IPIIPI00921533   IPI00975791   
Protein Interaction databases
DIP (DOE-UCLA)P0C8F1
IntAct (EBI)P0C8F1
FunCoupENSG00000237353
BioGRIDPATE4
STRING (EMBL)PATE4
ZODIACPATE4
Ontologies - Pathways
QuickGOP0C8F1
Ontology : AmiGOacrosomal vesicle  extracellular space  response to wounding  modulation of synaptic transmission  
Ontology : EGO-EBIacrosomal vesicle  extracellular space  response to wounding  modulation of synaptic transmission  
NDEx NetworkPATE4
Atlas of Cancer Signalling NetworkPATE4
Wikipedia pathwaysPATE4
Orthology - Evolution
OrthoDB399968
GeneTree (enSembl)ENSG00000237353
Phylogenetic Trees/Animal Genes : TreeFamPATE4
HOVERGENP0C8F1
HOGENOMP0C8F1
Homologs : HomoloGenePATE4
Homology/Alignments : Family Browser (UCSC)PATE4
Gene fusions - Rearrangements
Tumor Fusion PortalPATE4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPATE4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PATE4
dbVarPATE4
ClinVarPATE4
1000_GenomesPATE4 
Exome Variant ServerPATE4
ExAC (Exome Aggregation Consortium)ENSG00000237353
GNOMAD BrowserENSG00000237353
Genetic variants : HAPMAP399968
Genomic Variants (DGV)PATE4 [DGVbeta]
DECIPHERPATE4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPATE4 
Mutations
ICGC Data PortalPATE4 
TCGA Data PortalPATE4 
Broad Tumor PortalPATE4
OASIS PortalPATE4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPATE4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPATE4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PATE4
DgiDB (Drug Gene Interaction Database)PATE4
DoCM (Curated mutations)PATE4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PATE4 (select a term)
intoGenPATE4
Cancer3DPATE4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETPATE4
MedgenPATE4
Genetic Testing Registry PATE4
NextProtP0C8F1 [Medical]
TSGene399968
GENETestsPATE4
Target ValidationPATE4
Huge Navigator PATE4 [HugePedia]
snp3D : Map Gene to Disease399968
BioCentury BCIQPATE4
ClinGenPATE4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD399968
Chemical/Pharm GKB GenePA164724397
Clinical trialPATE4
Miscellaneous
canSAR (ICR)PATE4 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePATE4
EVEXPATE4
GoPubMedPATE4
iHOPPATE4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:27:51 CET 2017

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