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PATJ (PATJ crumbs cell polarity complex component)

Identity

Alias (NCBI)Cipp
INADL
InaD-like
hINADL
HGNC (Hugo) PATJ
HGNC Alias symbCipp
HGNC Alias nameinactivation-no-afterpotential D-like
 Pals1-associated tight junction
HGNC Previous nameINADL
HGNC Previous nameInaD-like (Drosophila)
LocusID (NCBI) 10207
Atlas_Id 78310
Location 1p31.3  [Link to chromosome band 1p31]
Location_base_pair Starts at 61742466 and ends at 62163919 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)PATJ   28881
Cards
Entrez_Gene (NCBI)PATJ    PATJ crumbs cell polarity complex component
AliasesCipp; INADL; InaD-like; hINADL
GeneCards (Weizmann)PATJ
Ensembl hg19 (Hinxton)ENSG00000132849 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000132849 [Gene_View]  ENSG00000132849 [Sequence]  chr1:61742466-62163919 [Contig_View]  PATJ [Vega]
ICGC DataPortalENSG00000132849
TCGA cBioPortalPATJ
AceView (NCBI)PATJ
Genatlas (Paris)PATJ
SOURCE (Princeton)PATJ
Genetics Home Reference (NIH)PATJ
Genomic and cartography
GoldenPath hg38 (UCSC)PATJ  -     chr1:61742466-62163919 +  1p31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PATJ  -     1p31.3   [Description]    (hg19-Feb_2009)
GoldenPathPATJ - 1p31.3 [CytoView hg19]  PATJ - 1p31.3 [CytoView hg38]
ImmunoBaseENSG00000132849
genome Data Viewer NCBIPATJ [Mapview hg19]  
OMIM603199   
Gene and transcription
Genbank (Entrez)AB044807 AF397170 AJ001306 AJ224747 AJ224748
RefSeq transcript (Entrez)NM_001350145 NM_005799 NM_176877 NM_176878
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PATJ
Alternative Splicing GalleryENSG00000132849
Gene ExpressionPATJ [ NCBI-GEO ]   PATJ [ EBI - ARRAY_EXPRESS ]   PATJ [ SEEK ]   PATJ [ MEM ]
Gene Expression Viewer (FireBrowse)PATJ [ Firebrowse - Broad ]
GenevisibleExpression of PATJ in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10207
GTEX Portal (Tissue expression)PATJ
Human Protein AtlasENSG00000132849-PATJ [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NI35   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NI35  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NI35
Splice isoforms : SwissVarQ8NI35
PhosPhoSitePlusQ8NI35
Domaine pattern : Prosite (Expaxy)L27 (PS51022)    PDZ (PS50106)   
Domains : Interpro (EBI)L27_2    L27_dom    L27_dom_sf    PDZ    PDZ_sf   
Domain families : Pfam (Sanger)L27_2 (PF09045)    PDZ (PF00595)   
Domain families : Pfam (NCBI)pfam09045    pfam00595   
Domain families : Smart (EMBL)L27 (SM00569)  PDZ (SM00228)  
Conserved Domain (NCBI)PATJ
Blocks (Seattle)PATJ
PDB (RSDB)1VF6    2D92    2DAZ    2DB5    2DLU    2DM8    2DMZ    2EHR    4Q2N    6IRD   
PDB Europe1VF6    2D92    2DAZ    2DB5    2DLU    2DM8    2DMZ    2EHR    4Q2N    6IRD   
PDB (PDBSum)1VF6    2D92    2DAZ    2DB5    2DLU    2DM8    2DMZ    2EHR    4Q2N    6IRD   
PDB (IMB)1VF6    2D92    2DAZ    2DB5    2DLU    2DM8    2DMZ    2EHR    4Q2N    6IRD   
Structural Biology KnowledgeBase1VF6    2D92    2DAZ    2DB5    2DLU    2DM8    2DMZ    2EHR    4Q2N    6IRD   
SCOP (Structural Classification of Proteins)1VF6    2D92    2DAZ    2DB5    2DLU    2DM8    2DMZ    2EHR    4Q2N    6IRD   
CATH (Classification of proteins structures)1VF6    2D92    2DAZ    2DB5    2DLU    2DM8    2DMZ    2EHR    4Q2N    6IRD   
SuperfamilyQ8NI35
Human Protein Atlas [tissue]ENSG00000132849-PATJ [tissue]
Peptide AtlasQ8NI35
HPRD04434
IPIIPI00304064   IPI00873708   IPI00377229   IPI00221128   IPI00607548   IPI01009892   IPI01018786   IPI00976090   IPI01010910   
Protein Interaction databases
DIP (DOE-UCLA)Q8NI35
IntAct (EBI)Q8NI35
BioGRIDPATJ
STRING (EMBL)PATJ
ZODIACPATJ
Ontologies - Pathways
QuickGOQ8NI35
Ontology : AmiGOprotein binding  centrosome  cytosol  plasma membrane  bicellular tight junction  apical plasma membrane  cell junction  centriolar satellite  intracellular signal transduction  perinuclear region of cytoplasm  extracellular exosome  bicellular tight junction assembly  
Ontology : EGO-EBIprotein binding  centrosome  cytosol  plasma membrane  bicellular tight junction  apical plasma membrane  cell junction  centriolar satellite  intracellular signal transduction  perinuclear region of cytoplasm  extracellular exosome  bicellular tight junction assembly  
NDEx NetworkPATJ
Atlas of Cancer Signalling NetworkPATJ
Wikipedia pathwaysPATJ
Orthology - Evolution
OrthoDB10207
GeneTree (enSembl)ENSG00000132849
Phylogenetic Trees/Animal Genes : TreeFamPATJ
HOGENOMQ8NI35
Homologs : HomoloGenePATJ
Homology/Alignments : Family Browser (UCSC)PATJ
Gene fusions - Rearrangements
Fusion : QuiverPATJ
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPATJ [hg38]
dbVarPATJ
ClinVarPATJ
MonarchPATJ
1000_GenomesPATJ 
Exome Variant ServerPATJ
GNOMAD BrowserENSG00000132849
Varsome BrowserPATJ
Genomic Variants (DGV)PATJ [DGVbeta]
DECIPHERPATJ [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPATJ 
Mutations
ICGC Data PortalPATJ 
TCGA Data PortalPATJ 
Broad Tumor PortalPATJ
OASIS PortalPATJ [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPATJ  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DPATJ
Mutations and Diseases : HGMDPATJ
BioMutasearch PATJ
DgiDB (Drug Gene Interaction Database)PATJ
DoCM (Curated mutations)PATJ (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PATJ (select a term)
intoGenPATJ
Cancer3DPATJ(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603199   
Orphanet
DisGeNETPATJ
MedgenPATJ
Genetic Testing Registry PATJ
NextProtQ8NI35 [Medical]
GENETestsPATJ
Target ValidationPATJ
Huge Navigator PATJ [HugePedia]
ClinGenPATJ
Clinical trials, drugs, therapy
MyCancerGenomePATJ
Protein Interactions : CTD
Pharm GKB GenePA134919267
Clinical trialPATJ
Miscellaneous
canSAR (ICR)PATJ (select the gene name)
HarmonizomePATJ
DataMed IndexPATJ
Probes
Litterature
PubMed56 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePATJ
EVEXPATJ
GoPubMedPATJ
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:21:51 CET 2020

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