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PATL2 (PAT1 homolog 2)

Identity

Alias_namesprotein associated with topoisomerase II homolog 2 (yeast)
Alias_symbol (synonym)Pat1a
Other aliashPat1a
HGNC (Hugo) PATL2
LocusID (NCBI) 197135
Atlas_Id 71679
Location 15q21.1  [Link to chromosome band 15q21]
Location_base_pair Starts at 44665732 and ends at 44676888 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PATL2   33630
Cards
Entrez_Gene (NCBI)PATL2  197135  PAT1 homolog 2
AliasesPat1a; hPat1a
GeneCards (Weizmann)PATL2
Ensembl hg19 (Hinxton)ENSG00000229474 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000229474 [Gene_View]  chr15:44665732-44676888 [Contig_View]  PATL2 [Vega]
ICGC DataPortalENSG00000229474
TCGA cBioPortalPATL2
AceView (NCBI)PATL2
Genatlas (Paris)PATL2
WikiGenes197135
SOURCE (Princeton)PATL2
Genetics Home Reference (NIH)PATL2
Genomic and cartography
GoldenPath hg38 (UCSC)PATL2  -     chr15:44665732-44676888 -  15q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PATL2  -     15q21.1   [Description]    (hg19-Feb_2009)
EnsemblPATL2 - 15q21.1 [CytoView hg19]  PATL2 - 15q21.1 [CytoView hg38]
Mapping of homologs : NCBIPATL2 [Mapview hg19]  PATL2 [Mapview hg38]
OMIM614661   
Gene and transcription
Genbank (Entrez)AK130783 AW138454 BC036924 BI835136 BI909158
RefSeq transcript (Entrez)NM_001145112 NM_001330283
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PATL2
Cluster EST : UnigeneHs.11594 [ NCBI ]
CGAP (NCI)Hs.11594
Alternative Splicing GalleryENSG00000229474
Gene ExpressionPATL2 [ NCBI-GEO ]   PATL2 [ EBI - ARRAY_EXPRESS ]   PATL2 [ SEEK ]   PATL2 [ MEM ]
Gene Expression Viewer (FireBrowse)PATL2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)197135
GTEX Portal (Tissue expression)PATL2
Protein : pattern, domain, 3D structure
UniProt/SwissProtC9JE40   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtC9JE40  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProC9JE40
Splice isoforms : SwissVarC9JE40
PhosPhoSitePlusC9JE40
Domains : Interpro (EBI)Topo_II-assoc_PAT1   
Domain families : Pfam (Sanger)PAT1 (PF09770)   
Domain families : Pfam (NCBI)pfam09770   
Conserved Domain (NCBI)PATL2
DMDM Disease mutations197135
Blocks (Seattle)PATL2
SuperfamilyC9JE40
Human Protein AtlasENSG00000229474
Peptide AtlasC9JE40
IPIIPI00737028   
Protein Interaction databases
DIP (DOE-UCLA)C9JE40
IntAct (EBI)C9JE40
FunCoupENSG00000229474
BioGRIDPATL2
STRING (EMBL)PATL2
ZODIACPATL2
Ontologies - Pathways
QuickGOC9JE40
Ontology : AmiGOdeadenylation-dependent decapping of nuclear-transcribed mRNA  P-body  RNA binding  RNA binding  protein binding  nucleus  cytoplasm  negative regulation of cytoplasmic mRNA processing body assembly  negative regulation of translation  intracellular ribonucleoprotein complex  cytoplasmic mRNA processing body assembly  
Ontology : EGO-EBIdeadenylation-dependent decapping of nuclear-transcribed mRNA  P-body  RNA binding  RNA binding  protein binding  nucleus  cytoplasm  negative regulation of cytoplasmic mRNA processing body assembly  negative regulation of translation  intracellular ribonucleoprotein complex  cytoplasmic mRNA processing body assembly  
NDEx NetworkPATL2
Atlas of Cancer Signalling NetworkPATL2
Wikipedia pathwaysPATL2
Orthology - Evolution
OrthoDB197135
GeneTree (enSembl)ENSG00000229474
Phylogenetic Trees/Animal Genes : TreeFamPATL2
HOVERGENC9JE40
HOGENOMC9JE40
Homologs : HomoloGenePATL2
Homology/Alignments : Family Browser (UCSC)PATL2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPATL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PATL2
dbVarPATL2
ClinVarPATL2
1000_GenomesPATL2 
Exome Variant ServerPATL2
ExAC (Exome Aggregation Consortium)PATL2 (select the gene name)
Genetic variants : HAPMAP197135
Genomic Variants (DGV)PATL2 [DGVbeta]
DECIPHERPATL2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPATL2 
Mutations
ICGC Data PortalPATL2 
TCGA Data PortalPATL2 
Broad Tumor PortalPATL2
OASIS PortalPATL2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPATL2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPATL2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PATL2
DgiDB (Drug Gene Interaction Database)PATL2
DoCM (Curated mutations)PATL2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PATL2 (select a term)
intoGenPATL2
Cancer3DPATL2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614661   
Orphanet
MedgenPATL2
Genetic Testing Registry PATL2
NextProtC9JE40 [Medical]
TSGene197135
GENETestsPATL2
Target ValidationPATL2
Huge Navigator PATL2 [HugePedia]
snp3D : Map Gene to Disease197135
BioCentury BCIQPATL2
ClinGenPATL2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD197135
Chemical/Pharm GKB GenePA164724408
Clinical trialPATL2
Miscellaneous
canSAR (ICR)PATL2 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePATL2
EVEXPATL2
GoPubMedPATL2
iHOPPATL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:35:35 CEST 2017

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