PAX1 (paired box 1)

Identity

Other names	HUP48
HGNC	PAX1
Location	20p11.22
Location_base_pair	Starts at 21634297 and ends at 21644620 bp from pter ( according to hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

External links

	Nomenclature
HGNC	PAX1   8615
Entrez_Gene	PAX1  5075  paired box 1
	Cards
GeneCards	PAX1
Ensembl	ENSG00000125813 [Gene_View]  PAX1 [Vega]
Genatlas	PAX1
	Genomic and cartography
GoldenPath	PAX1  -  20p11.22   chr20:21634297-21644620 +  20p11.22   [Description]    (hg18-March_2006)
Ensembl	PAX1 - 20p11.22 [CytoView]
NCBI	Mapview
OMIM	167411 Disease map [OMIM]
HomoloGene	PAX1
	Gene and transcription
Genbank	BC069134 [ ENTREZ ]
RefSeq	NM_006192 [ SRS ]    NM_006192 [ ENTREZ ]
RefSeq	AC_000063 [ SRS ]    AC_000063 [ ENTREZ ]
RefSeq	AC_000152 [ SRS ]    AC_000152 [ ENTREZ ]
RefSeq	NC_000020 [ SRS ]    NC_000020 [ ENTREZ ]
RefSeq	NT_011387 [ SRS ]    NT_011387 [ ENTREZ ]
RefSeq	NW_001838652 [ SRS ]    NW_001838652 [ ENTREZ ]
RefSeq	NW_927317 [ SRS ]    NW_927317 [ ENTREZ ]
CCDS	PAX1 CCDS - NCBI
AceView	PAX1 AceView - NCBI
Unigene	Hs.349082 [ SRS ]    Hs.349082 [ NCBI ]
	Protein : pattern, domain, 3D structure
SwissProt	P15863 [ SRS]    P15863 [ EXPASY ]     P15863 [ INTERPRO ]     P15863 [ UNIPROT ] P15863 [ VarSplice FASTA ]
Prosite	PS00034 PAIRED_1 [ SRS ]    PS00034 PAIRED_1 [ Expasy ]
Prosite	PS51057 PAIRED_2 [ SRS ]    PS51057 PAIRED_2 [ Expasy ]
Interpro	IPR001523 Paired_box_N [ SRS ]    IPR001523 Paired_box_N [ EBI ]
Interpro	IPR011991 Wing_hlx_DNA_bd [ SRS ]    IPR011991 Wing_hlx_DNA_bd [ EBI ]
CluSTr	P15863
Pfam	PF00292 PAX [ SRS ]    PF00292 PAX [ Sanger ]    pfam00292 [ NCBI-CDD ]
Smart	SM00351 PAX [EMBL]
Blocks	P15863
HPRD	01332
	Protein Interaction databases
DIP	P15863
IntAct	P15863
	Polymorphism : SNP, mutations, diseases
OMIM	167411    [ map ]
GENETests	167411
SNP	PAX1 [dbSNP-NCBI]
SNP	NM_006192 [SNP-NCI]
SNP	PAX1 [GeneSNPs - Utah]  PAX1] [HGBASE - SRS]
HAPMAP	PAX1 [HAPMAP]
COSMIC	PAX1 [Somatic mutation (COSMIC-CGP-Sanger)]
HGMD	PAX1
Genetic Association	PAX1
CDC HuGE	PAX1
	General knowledge
Family Browser	PAX1 [UCSC Family Browser]
SOURCE	NM_006192
SMD	Hs.349082
SAGE	Hs.349082
GO	skeletal development [Amigo]  skeletal development
GO	somitogenesis [Amigo]  somitogenesis
GO	DNA binding [Amigo]  DNA binding
GO	nucleus [Amigo]  nucleus
GO	regulation of transcription, DNA-dependent [Amigo]  regulation of transcription, DNA-dependent
GO	transcription from RNA polymerase II promoter [Amigo]  transcription from RNA polymerase II promoter
GO	pattern specification process [Amigo]  pattern specification process
GO	CD4-positive, alpha beta T cell differentiation [Amigo]  CD4-positive, alpha beta T cell differentiation
GO	CD8-positive, alpha-beta T cell differentiation [Amigo]  CD8-positive, alpha-beta T cell differentiation
GO	thymus development [Amigo]  thymus development
GO	parathyroid gland development [Amigo]  parathyroid gland development
PubGene	PAX1
TreeFam	PAX1
CTD	5075 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	PAX1 Related clones (RZPD - Berlin)
	PubMed
PubMed	15 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Thu Nov 27 14:02:17 2008