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PAXBP1-AS1 (PAXBP1 antisense RNA 1)

Identity

Alias_namesGCFC1-AS1
GCFC1 antisense RNA 1 (non-protein coding)
GCFC1 antisense RNA 1
Other alias
HGNC (Hugo) PAXBP1-AS1
LocusID (NCBI) 100506215
Atlas_Id 71683
Location 21q22.11  [Link to chromosome band 21q22]
Location_base_pair Starts at 32728114 and ends at 32743122 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PAXBP1-AS1   39603
Cards
Entrez_Gene (NCBI)PAXBP1-AS1  100506215  PAXBP1 antisense RNA 1
AliasesGCFC1-AS1
GeneCards (Weizmann)PAXBP1-AS1
Ensembl hg19 (Hinxton)ENSG00000238197 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000238197 [Gene_View]  ENSG00000238197 [Sequence]  chr21:32728114-32743122 [Contig_View]  PAXBP1-AS1 [Vega]
ICGC DataPortalENSG00000238197
TCGA cBioPortalPAXBP1-AS1
AceView (NCBI)PAXBP1-AS1
Genatlas (Paris)PAXBP1-AS1
WikiGenes100506215
SOURCE (Princeton)PAXBP1-AS1
Genetics Home Reference (NIH)PAXBP1-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)PAXBP1-AS1  -     chr21:32728114-32743122 +  21q22.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PAXBP1-AS1  -     21q22.11   [Description]    (hg19-Feb_2009)
EnsemblPAXBP1-AS1 - 21q22.11 [CytoView hg19]  PAXBP1-AS1 - 21q22.11 [CytoView hg38]
Mapping of homologs : NCBIPAXBP1-AS1 [Mapview hg19]  PAXBP1-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056384 BC038361
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PAXBP1-AS1
Cluster EST : UnigeneHs.657123 [ NCBI ]
CGAP (NCI)Hs.657123
Alternative Splicing GalleryENSG00000238197
Gene ExpressionPAXBP1-AS1 [ NCBI-GEO ]   PAXBP1-AS1 [ EBI - ARRAY_EXPRESS ]   PAXBP1-AS1 [ SEEK ]   PAXBP1-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)PAXBP1-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100506215
GTEX Portal (Tissue expression)PAXBP1-AS1
Human Protein AtlasENSG00000238197-PAXBP1-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PAXBP1-AS1
DMDM Disease mutations100506215
Blocks (Seattle)PAXBP1-AS1
Human Protein Atlas [tissue]ENSG00000238197-PAXBP1-AS1 [tissue]
Protein Interaction databases
FunCoupENSG00000238197
BioGRIDPAXBP1-AS1
STRING (EMBL)PAXBP1-AS1
ZODIACPAXBP1-AS1
Ontologies - Pathways
Huge Navigator PAXBP1-AS1 [HugePedia]
snp3D : Map Gene to Disease100506215
BioCentury BCIQPAXBP1-AS1
ClinGenPAXBP1-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100506215
Clinical trialPAXBP1-AS1
Miscellaneous
canSAR (ICR)PAXBP1-AS1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePAXBP1-AS1
EVEXPAXBP1-AS1
GoPubMedPAXBP1-AS1
iHOPPAXBP1-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:23:06 CEST 2018
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