Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PAXIP1-AS2 (PAXIP1 antisense RNA 2)

Identity

Alias (NCBI)PAXIP1OS
HGNC (Hugo) PAXIP1-AS2
HGNC Previous namePAXIP1OS
HGNC Previous namePAXIP1 opposite strand
LocusID (NCBI) 100132707
Atlas_Id 71685
Location 7q36.2  [Link to chromosome band 7q36]
Location_base_pair Starts at 154928517 and ends at 154946850 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PAXIP1-AS2   48958
Cards
Entrez_Gene (NCBI)PAXIP1-AS2  100132707  PAXIP1 antisense RNA 2
AliasesPAXIP1OS
GeneCards (Weizmann)PAXIP1-AS2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr7:154928517-154946850 [Contig_View]  PAXIP1-AS2 [Vega]
TCGA cBioPortalPAXIP1-AS2
AceView (NCBI)PAXIP1-AS2
Genatlas (Paris)PAXIP1-AS2
WikiGenes100132707
SOURCE (Princeton)PAXIP1-AS2
Genetics Home Reference (NIH)PAXIP1-AS2
Genomic and cartography
GoldenPath hg38 (UCSC)PAXIP1-AS2  -     chr7:154928517-154946850 +  7q36.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PAXIP1-AS2  -     7q36.2   [Description]    (hg19-Feb_2009)
GoldenPathPAXIP1-AS2 - 7q36.2 [CytoView hg19]  PAXIP1-AS2 - 7q36.2 [CytoView hg38]
genome Data Viewer NCBIPAXIP1-AS2 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK056609 AK311721 BC033053 BC050402 CA309060
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PAXIP1-AS2
Gene ExpressionPAXIP1-AS2 [ NCBI-GEO ]   PAXIP1-AS2 [ EBI - ARRAY_EXPRESS ]   PAXIP1-AS2 [ SEEK ]   PAXIP1-AS2 [ MEM ]
Gene Expression Viewer (FireBrowse)PAXIP1-AS2 [ Firebrowse - Broad ]
GenevisibleExpression of PAXIP1-AS2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100132707
GTEX Portal (Tissue expression)PAXIP1-AS2
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PAXIP1-AS2
DMDM Disease mutations100132707
Blocks (Seattle)PAXIP1-AS2
IPIIPI00887363   
Protein Interaction databases
BioGRIDPAXIP1-AS2
STRING (EMBL)PAXIP1-AS2
ZODIACPAXIP1-AS2
Ontologies - Pathways
Huge Navigator PAXIP1-AS2 [HugePedia]
snp3D : Map Gene to Disease100132707
BioCentury BCIQPAXIP1-AS2
ClinGenPAXIP1-AS2
Clinical trials, drugs, therapy
Protein Interactions : CTD100132707
Clinical trialPAXIP1-AS2
Miscellaneous
canSAR (ICR)PAXIP1-AS2 (select the gene name)
HarmonizomePAXIP1-AS2
DataMed IndexPAXIP1-AS2
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePAXIP1-AS2
EVEXPAXIP1-AS2
GoPubMedPAXIP1-AS2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Aug 22 19:30:48 CEST 2020

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