Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PBDC1 (polysaccharide biosynthesis domain containing 1)

Identity

Alias_namesCXorf26
chromosome X open reading frame 26
Alias_symbol (synonym)MGC874
Other alias
HGNC (Hugo) PBDC1
LocusID (NCBI) 51260
Atlas_Id 71686
Location Xq13.3  [Link to chromosome band Xq13]
Location_base_pair Starts at 76172929 and ends at 76178310 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PBDC1   28790
Cards
Entrez_Gene (NCBI)PBDC1  51260  polysaccharide biosynthesis domain containing 1
AliasesCXorf26
GeneCards (Weizmann)PBDC1
Ensembl hg19 (Hinxton)ENSG00000102390 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000102390 [Gene_View]  chrX:76172929-76178310 [Contig_View]  PBDC1 [Vega]
ICGC DataPortalENSG00000102390
TCGA cBioPortalPBDC1
AceView (NCBI)PBDC1
Genatlas (Paris)PBDC1
WikiGenes51260
SOURCE (Princeton)PBDC1
Genetics Home Reference (NIH)PBDC1
Genomic and cartography
GoldenPath hg38 (UCSC)PBDC1  -     chrX:76172929-76178310 +  Xq13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PBDC1  -     Xq13.3   [Description]    (hg19-Feb_2009)
EnsemblPBDC1 - Xq13.3 [CytoView hg19]  PBDC1 - Xq13.3 [CytoView hg38]
Mapping of homologs : NCBIPBDC1 [Mapview hg19]  PBDC1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI919559 AY927529 AY927616 BC001220 BC051894
RefSeq transcript (Entrez)NM_001300888 NM_016500
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PBDC1
Cluster EST : UnigeneHs.370100 [ NCBI ]
CGAP (NCI)Hs.370100
Alternative Splicing GalleryENSG00000102390
Gene ExpressionPBDC1 [ NCBI-GEO ]   PBDC1 [ EBI - ARRAY_EXPRESS ]   PBDC1 [ SEEK ]   PBDC1 [ MEM ]
Gene Expression Viewer (FireBrowse)PBDC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51260
GTEX Portal (Tissue expression)PBDC1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BVG4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BVG4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BVG4
Splice isoforms : SwissVarQ9BVG4
PhosPhoSitePlusQ9BVG4
Domains : Interpro (EBI)PBDC1_metazoa/fungi    Polysacc_synth_dom    Yst0336-like_domain   
Domain families : Pfam (Sanger)Polysacc_synt_4 (PF04669)   
Domain families : Pfam (NCBI)pfam04669   
Conserved Domain (NCBI)PBDC1
DMDM Disease mutations51260
Blocks (Seattle)PBDC1
SuperfamilyQ9BVG4
Human Protein AtlasENSG00000102390
Peptide AtlasQ9BVG4
HPRD06659
IPIIPI00107104   IPI00921211   IPI00640930   
Protein Interaction databases
DIP (DOE-UCLA)Q9BVG4
IntAct (EBI)Q9BVG4
FunCoupENSG00000102390
BioGRIDPBDC1
STRING (EMBL)PBDC1
ZODIACPBDC1
Ontologies - Pathways
QuickGOQ9BVG4
Ontology : AmiGOmolecular_function  cellular_component  cytoplasm  biological_process  
Ontology : EGO-EBImolecular_function  cellular_component  cytoplasm  biological_process  
NDEx NetworkPBDC1
Atlas of Cancer Signalling NetworkPBDC1
Wikipedia pathwaysPBDC1
Orthology - Evolution
OrthoDB51260
GeneTree (enSembl)ENSG00000102390
Phylogenetic Trees/Animal Genes : TreeFamPBDC1
HOVERGENQ9BVG4
HOGENOMQ9BVG4
Homologs : HomoloGenePBDC1
Homology/Alignments : Family Browser (UCSC)PBDC1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPBDC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PBDC1
dbVarPBDC1
ClinVarPBDC1
1000_GenomesPBDC1 
Exome Variant ServerPBDC1
ExAC (Exome Aggregation Consortium)PBDC1 (select the gene name)
Genetic variants : HAPMAP51260
Genomic Variants (DGV)PBDC1 [DGVbeta]
DECIPHERPBDC1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPBDC1 
Mutations
ICGC Data PortalPBDC1 
TCGA Data PortalPBDC1 
Broad Tumor PortalPBDC1
OASIS PortalPBDC1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDPBDC1
BioMutasearch PBDC1
DgiDB (Drug Gene Interaction Database)PBDC1
DoCM (Curated mutations)PBDC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PBDC1 (select a term)
intoGenPBDC1
Cancer3DPBDC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenPBDC1
Genetic Testing Registry PBDC1
NextProtQ9BVG4 [Medical]
TSGene51260
GENETestsPBDC1
Target ValidationPBDC1
Huge Navigator PBDC1 [HugePedia]
snp3D : Map Gene to Disease51260
BioCentury BCIQPBDC1
ClinGenPBDC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51260
Chemical/Pharm GKB GenePA128394657
Clinical trialPBDC1
Miscellaneous
canSAR (ICR)PBDC1 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePBDC1
EVEXPBDC1
GoPubMedPBDC1
iHOPPBDC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:35:36 CEST 2017

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