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PBLD (phenazine biosynthesis like protein domain containing)

Identity

Alias_namesphenazine biosynthesis-like protein domain containing
Alias_symbol (synonym)MAWBP
MAWDBP
FLJ14767
Other aliasHEL-S-306
HGNC (Hugo) PBLD
LocusID (NCBI) 64081
Atlas_Id 53749
Location 10q21.3  [Link to chromosome band 10q21]
Location_base_pair Starts at 68285081 and ends at 68332927 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PBLD (10q21.3) / PBLD (10q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PBLD   23301
Cards
Entrez_Gene (NCBI)PBLD  64081  phenazine biosynthesis like protein domain containing
AliasesHEL-S-306; MAWBP; MAWDBP
GeneCards (Weizmann)PBLD
Ensembl hg19 (Hinxton)ENSG00000108187 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000108187 [Gene_View]  chr10:68285081-68332927 [Contig_View]  PBLD [Vega]
ICGC DataPortalENSG00000108187
TCGA cBioPortalPBLD
AceView (NCBI)PBLD
Genatlas (Paris)PBLD
WikiGenes64081
SOURCE (Princeton)PBLD
Genetics Home Reference (NIH)PBLD
Genomic and cartography
GoldenPath hg38 (UCSC)PBLD  -     chr10:68285081-68332927 -  10q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PBLD  -     10q21.3   [Description]    (hg19-Feb_2009)
EnsemblPBLD - 10q21.3 [CytoView hg19]  PBLD - 10q21.3 [CytoView hg38]
Mapping of homologs : NCBIPBLD [Mapview hg19]  PBLD [Mapview hg38]
OMIM612189   
Gene and transcription
Genbank (Entrez)AB049758 AI114748 AI439144 AK027673 AK092826
RefSeq transcript (Entrez)NM_001033083 NM_022129
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PBLD
Cluster EST : UnigeneHs.198158 [ NCBI ]
CGAP (NCI)Hs.198158
Alternative Splicing GalleryENSG00000108187
Gene ExpressionPBLD [ NCBI-GEO ]   PBLD [ EBI - ARRAY_EXPRESS ]   PBLD [ SEEK ]   PBLD [ MEM ]
Gene Expression Viewer (FireBrowse)PBLD [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64081
GTEX Portal (Tissue expression)PBLD
Protein : pattern, domain, 3D structure
UniProt/SwissProtP30039   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP30039  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP30039
Splice isoforms : SwissVarP30039
Catalytic activity : Enzyme5.1.-.- [ Enzyme-Expasy ]   5.1.-.-5.1.-.- [ IntEnz-EBI ]   5.1.-.- [ BRENDA ]   5.1.-.- [ KEGG ]   
PhosPhoSitePlusP30039
Domains : Interpro (EBI)Phenazine_PhzF   
Domain families : Pfam (Sanger)PhzC-PhzF (PF02567)   
Domain families : Pfam (NCBI)pfam02567   
Conserved Domain (NCBI)PBLD
DMDM Disease mutations64081
Blocks (Seattle)PBLD
SuperfamilyP30039
Human Protein AtlasENSG00000108187
Peptide AtlasP30039
HPRD14366
IPIIPI00024896   IPI00651719   IPI00167973   IPI00396138   
Protein Interaction databases
DIP (DOE-UCLA)P30039
IntAct (EBI)P30039
FunCoupENSG00000108187
BioGRIDPBLD
STRING (EMBL)PBLD
ZODIACPBLD
Ontologies - Pathways
QuickGOP30039
Ontology : AmiGOmolecular_function  protein binding  cytoplasm  biosynthetic process  negative regulation of epithelial cell migration  negative regulation of epithelial to mesenchymal transition  isomerase activity  maintenance of gastrointestinal epithelium  negative regulation of transforming growth factor beta receptor signaling pathway  identical protein binding  negative regulation of epithelial cell proliferation  negative regulation of SMAD protein import into nucleus  negative regulation of pathway-restricted SMAD protein phosphorylation  extracellular exosome  
Ontology : EGO-EBImolecular_function  protein binding  cytoplasm  biosynthetic process  negative regulation of epithelial cell migration  negative regulation of epithelial to mesenchymal transition  isomerase activity  maintenance of gastrointestinal epithelium  negative regulation of transforming growth factor beta receptor signaling pathway  identical protein binding  negative regulation of epithelial cell proliferation  negative regulation of SMAD protein import into nucleus  negative regulation of pathway-restricted SMAD protein phosphorylation  extracellular exosome  
NDEx NetworkPBLD
Atlas of Cancer Signalling NetworkPBLD
Wikipedia pathwaysPBLD
Orthology - Evolution
OrthoDB64081
GeneTree (enSembl)ENSG00000108187
Phylogenetic Trees/Animal Genes : TreeFamPBLD
HOVERGENP30039
HOGENOMP30039
Homologs : HomoloGenePBLD
Homology/Alignments : Family Browser (UCSC)PBLD
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPBLD [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PBLD
dbVarPBLD
ClinVarPBLD
1000_GenomesPBLD 
Exome Variant ServerPBLD
ExAC (Exome Aggregation Consortium)PBLD (select the gene name)
Genetic variants : HAPMAP64081
Genomic Variants (DGV)PBLD [DGVbeta]
DECIPHERPBLD [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPBLD 
Mutations
ICGC Data PortalPBLD 
TCGA Data PortalPBLD 
Broad Tumor PortalPBLD
OASIS PortalPBLD [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPBLD  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPBLD
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PBLD
DgiDB (Drug Gene Interaction Database)PBLD
DoCM (Curated mutations)PBLD (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PBLD (select a term)
intoGenPBLD
Cancer3DPBLD(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612189   
Orphanet
MedgenPBLD
Genetic Testing Registry PBLD
NextProtP30039 [Medical]
TSGene64081
GENETestsPBLD
Target ValidationPBLD
Huge Navigator PBLD [HugePedia]
snp3D : Map Gene to Disease64081
BioCentury BCIQPBLD
ClinGenPBLD
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64081
Chemical/Pharm GKB GenePA162398821
Clinical trialPBLD
Miscellaneous
canSAR (ICR)PBLD (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePBLD
EVEXPBLD
GoPubMedPBLD
iHOPPBLD
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:23:52 CEST 2017

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