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PBOV1 (prostate and breast cancer overexpressed 1)

Identity

Alias_symbol (synonym)UC28
UROC28
Other aliasdJ171N11.2
HGNC (Hugo) PBOV1
LocusID (NCBI) 59351
Atlas_Id 41646
Location 6q23.3  [Link to chromosome band 6q23]
Location_base_pair Starts at 138215986 and ends at 138218490 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PBOV1   21079
Cards
Entrez_Gene (NCBI)PBOV1  59351  prostate and breast cancer overexpressed 1
AliasesUC28; UROC28; dJ171N11.2
GeneCards (Weizmann)PBOV1
Ensembl hg19 (Hinxton)ENSG00000254440 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000254440 [Gene_View]  ENSG00000254440 [Sequence]  chr6:138215986-138218490 [Contig_View]  PBOV1 [Vega]
ICGC DataPortalENSG00000254440
TCGA cBioPortalPBOV1
AceView (NCBI)PBOV1
Genatlas (Paris)PBOV1
WikiGenes59351
SOURCE (Princeton)PBOV1
Genetics Home Reference (NIH)PBOV1
Genomic and cartography
GoldenPath hg38 (UCSC)PBOV1  -     chr6:138215986-138218490 -  6q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PBOV1  -     6q23.3   [Description]    (hg19-Feb_2009)
EnsemblPBOV1 - 6q23.3 [CytoView hg19]  PBOV1 - 6q23.3 [CytoView hg38]
Mapping of homologs : NCBIPBOV1 [Mapview hg19]  PBOV1 [Mapview hg38]
OMIM605669   
Gene and transcription
Genbank (Entrez)AF189269 AF189270 BC069109
RefSeq transcript (Entrez)NM_021635
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PBOV1
Cluster EST : UnigeneHs.302016 [ NCBI ]
CGAP (NCI)Hs.302016
Alternative Splicing GalleryENSG00000254440
Gene ExpressionPBOV1 [ NCBI-GEO ]   PBOV1 [ EBI - ARRAY_EXPRESS ]   PBOV1 [ SEEK ]   PBOV1 [ MEM ]
Gene Expression Viewer (FireBrowse)PBOV1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)59351
GTEX Portal (Tissue expression)PBOV1
Human Protein AtlasENSG00000254440-PBOV1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9GZY1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9GZY1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9GZY1
Splice isoforms : SwissVarQ9GZY1
PhosPhoSitePlusQ9GZY1
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PBOV1
DMDM Disease mutations59351
Blocks (Seattle)PBOV1
SuperfamilyQ9GZY1
Human Protein Atlas [tissue]ENSG00000254440-PBOV1 [tissue]
Peptide AtlasQ9GZY1
HPRD16137
IPIIPI00012457   
Protein Interaction databases
DIP (DOE-UCLA)Q9GZY1
IntAct (EBI)Q9GZY1
FunCoupENSG00000254440
BioGRIDPBOV1
STRING (EMBL)PBOV1
ZODIACPBOV1
Ontologies - Pathways
QuickGOQ9GZY1
Ontology : AmiGOnucleus  cytoplasm  
Ontology : EGO-EBInucleus  cytoplasm  
NDEx NetworkPBOV1
Atlas of Cancer Signalling NetworkPBOV1
Wikipedia pathwaysPBOV1
Orthology - Evolution
OrthoDB59351
GeneTree (enSembl)ENSG00000254440
Phylogenetic Trees/Animal Genes : TreeFamPBOV1
HOVERGENQ9GZY1
HOGENOMQ9GZY1
Homologs : HomoloGenePBOV1
Homology/Alignments : Family Browser (UCSC)PBOV1
Gene fusions - Rearrangements
Fusion : QuiverPBOV1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPBOV1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PBOV1
dbVarPBOV1
ClinVarPBOV1
1000_GenomesPBOV1 
Exome Variant ServerPBOV1
ExAC (Exome Aggregation Consortium)ENSG00000254440
GNOMAD BrowserENSG00000254440
Varsome BrowserPBOV1
Genetic variants : HAPMAP59351
Genomic Variants (DGV)PBOV1 [DGVbeta]
DECIPHERPBOV1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPBOV1 
Mutations
ICGC Data PortalPBOV1 
TCGA Data PortalPBOV1 
Broad Tumor PortalPBOV1
OASIS PortalPBOV1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPBOV1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPBOV1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PBOV1
DgiDB (Drug Gene Interaction Database)PBOV1
DoCM (Curated mutations)PBOV1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PBOV1 (select a term)
intoGenPBOV1
Cancer3DPBOV1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605669   
Orphanet
DisGeNETPBOV1
MedgenPBOV1
Genetic Testing Registry PBOV1
NextProtQ9GZY1 [Medical]
TSGene59351
GENETestsPBOV1
Target ValidationPBOV1
Huge Navigator PBOV1 [HugePedia]
snp3D : Map Gene to Disease59351
BioCentury BCIQPBOV1
ClinGenPBOV1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD59351
Chemical/Pharm GKB GenePA134869958
Clinical trialPBOV1
Miscellaneous
canSAR (ICR)PBOV1 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePBOV1
EVEXPBOV1
GoPubMedPBOV1
iHOPPBOV1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Aug 27 11:42:59 CEST 2018

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