Atlas of Genetics and Cytogenetics in Oncology and Haematology

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PBX4 (pre-B-cell leukemia homeobox 4)

Identity

Other names-
HGNC (Hugo) PBX4
LocusID (NCBI) 80714
Location 19p13.11
Location_base_pair Starts at 19672516 and ends at 19729725 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PBX4   13403
Entrez_Gene (NCBI)PBX4  80714  pre-B-cell leukemia homeobox 4
Cards
GeneCards (Weizmann)PBX4
Ensembl (Hinxton)ENSG00000105717 [Gene_View]  chr19:19672516-19729725 [Contig_View]  PBX4 [Vega]
AceView (NCBI)PBX4
Genatlas (Paris)PBX4
SOURCE (Stanford)NM_025245
Genomic and cartography
GoldenPath (UCSC)PBX4  -  19p13.11   chr19:19672516-19729725 -  19p13.11   [Description]    (hg19-Feb_2009)
EnsemblPBX4 - 19p13.11 [CytoView]
Mapping of homologs : NCBIPBX4 [Mapview]
OMIM608127   
Gene and transcription
Genbank (Entrez)AJ300182 AK097427 AK301631 BC033067 BC141859
RefSeq transcript (SRS)NM_025245
RefSeq transcript (Entrez)NM_025245
RefSeq genomic (SRS)AC_000151 NC_000019 NC_018930 NT_011295 NW_001838484 NW_004078098
RefSeq genomic (Entrez)AC_000151 NC_000019 NC_018930 NT_011295 NW_001838484 NW_004078098
Consensus coding sequences : CCDS (NCBI)PBX4
Cluster EST : UnigeneHs.466257 [ SRS ] Hs.466257 [ NCBI ]
CGAP (NCI)Hs.466257
Alternative Splicing : Fast-db (Paris)GSHG0015649
Alternative Splicing GalleryENSG00000105717
Gene ExpressionPBX4 [ NCBI-GEO ]   PBX4 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BYU1 (SRS) Q9BYU1 (Uniprot)
NextProtQ9BYU1
With graphics : InterProQ9BYU1
Splice isoforms : SwissVarQ9BYU1(Swissvar)
Domaine pattern : Prosite (SRS)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domaine pattern : Prosite (Expaxy)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domains : Interpro (SRS)Homeodomain    Homeodomain-like    PBX   
Domains : Interpro (EBI)Homeodomain    Homeodomain-like    PBX   
Related proteins : CluSTrQ9BYU1
Domain families : Pfam (SRS)Homeobox (PF00046)    PBC (PF03792)   
Domain families : Pfam (Sanger)Homeobox (PF00046)    PBC (PF03792)   
Domain families : Pfam (NCBI)pfam00046    pfam03792   
Domain families : Smart (EMBL)HOX (SM00389)  
DMDM80714
Blocks (Seattle)Q9BYU1
Human Protein AtlasENSG00000105717
HPRD16287
IPIIPI00019294   
Protein Interaction databases
DIP (DOE-UCLA)Q9BYU1
IntAct (EBI)Q9BYU1
FunCoupENSG00000105717
REACTOMEPBX4
Protein Interaction Database80714
BioGRIDPBX4
InParanoidQ9BYU1
Interologous Interaction database Q9BYU1
IntegromeDBPBX4
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)PBX4
SNP (GeneSNP Utah)PBX4
SNP : HGBasePBX4
Genetic variants : HAPMAPPBX4
Somatic Mutations in Cancer : COSMICPBX4 
CONAN: Copy Number AnalysisPBX4 
Mutations and Diseases : HGMDPBX4
OMIM608127   
GENETests608127   
Disease Genetic AssociationPBX4
Huge Navigator PBX4 [HugePedia]  PBX4 [HugeCancerGEM]
Genomic VariantsPBX4  PBX4 [DGVbeta]
snp3D : Map Gene to Disease80714
General knowledge
Homologs : HomoloGenePBX4
Homology/Alignments : Family Browser (UCSC)PBX4
Phylogenetic Trees/Animal Genes : TreeFamPBX4
Chemical/Protein Interactions : CTD80714
Chemical/Pharm GKB GenePA32973
Clinical trialPBX4
Cancer Resource (Charite)ENSG00000105717
Ontology : AmiGOXY body  sequence-specific DNA binding transcription factor activity  nucleus  transcription from RNA polymerase II promoter  sequence-specific DNA binding  positive regulation of transcription, DNA-dependent  
Ontology : EGO-EBIXY body  sequence-specific DNA binding transcription factor activity  nucleus  transcription from RNA polymerase II promoter  sequence-specific DNA binding  positive regulation of transcription, DNA-dependent  
Other databases
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
PubGenePBX4
iHOPPBX4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:30:54 CEST 2013
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