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PCAT1 (prostate cancer associated transcript 1 (non-protein coding))

Identity

Alias_symbol (synonym)PCAT-1
PCA1
Other alias
HGNC (Hugo) PCAT1
LocusID (NCBI) 100750225
Atlas_Id 43609
Location 8q24.21  [Link to chromosome band 8q24]
Location_base_pair Starts at 127013154 and ends at 127021014 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCAT1   43022
Cards
Entrez_Gene (NCBI)PCAT1  100750225  prostate cancer associated transcript 1 (non-protein coding)
AliasesPCA1; PCAT-1
GeneCards (Weizmann)PCAT1
Ensembl hg19 (Hinxton)ENSG00000253438 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000253438 [Gene_View]  chr8:127013154-127021014 [Contig_View]  PCAT1 [Vega]
ICGC DataPortalENSG00000253438
TCGA cBioPortalPCAT1
AceView (NCBI)PCAT1
Genatlas (Paris)PCAT1
WikiGenes100750225
SOURCE (Princeton)PCAT1
Genetics Home Reference (NIH)PCAT1
Genomic and cartography
GoldenPath hg38 (UCSC)PCAT1  -     chr8:127013154-127021014 +  8q24.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCAT1  -     8q24.21   [Description]    (hg19-Feb_2009)
EnsemblPCAT1 - 8q24.21 [CytoView hg19]  PCAT1 - 8q24.21 [CytoView hg38]
Mapping of homologs : NCBIPCAT1 [Mapview hg19]  PCAT1 [Mapview hg38]
OMIM616043   
Gene and transcription
Genbank (Entrez)HQ605084
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCAT1
Cluster EST : UnigeneHs.571530 [ NCBI ]
CGAP (NCI)Hs.571530
Alternative Splicing GalleryENSG00000253438
Gene ExpressionPCAT1 [ NCBI-GEO ]   PCAT1 [ EBI - ARRAY_EXPRESS ]   PCAT1 [ SEEK ]   PCAT1 [ MEM ]
Gene Expression Viewer (FireBrowse)PCAT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100750225
GTEX Portal (Tissue expression)PCAT1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PCAT1
DMDM Disease mutations100750225
Blocks (Seattle)PCAT1
Human Protein AtlasENSG00000253438
Protein Interaction databases
FunCoupENSG00000253438
BioGRIDPCAT1
STRING (EMBL)PCAT1
ZODIACPCAT1
Ontologies - Pathways
Huge Navigator PCAT1 [HugePedia]
snp3D : Map Gene to Disease100750225
BioCentury BCIQPCAT1
ClinGenPCAT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100750225
Clinical trialPCAT1
Miscellaneous
canSAR (ICR)PCAT1 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCAT1
EVEXPCAT1
GoPubMedPCAT1
iHOPPCAT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:30:23 CEST 2017

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