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PCAT18 (prostate cancer associated transcript 18 (non-protein coding))

Identity

Alias_symbol (synonym)LINC01092
Other alias
HGNC (Hugo) PCAT18
LocusID (NCBI) 728606
Atlas_Id 53693
Location 18q11.2  [Link to chromosome band 18q11]
Location_base_pair Starts at 26687621 and ends at 26703638 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCAT18   49211
Cards
Entrez_Gene (NCBI)PCAT18  728606  prostate cancer associated transcript 18 (non-protein coding)
AliasesLINC01092
GeneCards (Weizmann)PCAT18
Ensembl hg19 (Hinxton)ENSG00000265369 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000265369 [Gene_View]  chr18:26687621-26703638 [Contig_View]  PCAT18 [Vega]
ICGC DataPortalENSG00000265369
TCGA cBioPortalPCAT18
AceView (NCBI)PCAT18
Genatlas (Paris)PCAT18
WikiGenes728606
SOURCE (Princeton)PCAT18
Genetics Home Reference (NIH)PCAT18
Genomic and cartography
GoldenPath hg38 (UCSC)PCAT18  -     chr18:26687621-26703638 -  18q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCAT18  -     18q11.2   [Description]    (hg19-Feb_2009)
EnsemblPCAT18 - 18q11.2 [CytoView hg19]  PCAT18 - 18q11.2 [CytoView hg38]
Mapping of homologs : NCBIPCAT18 [Mapview hg19]  PCAT18 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056805
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCAT18
Cluster EST : UnigeneHs.170599 [ NCBI ]
CGAP (NCI)Hs.170599
Alternative Splicing GalleryENSG00000265369
Gene ExpressionPCAT18 [ NCBI-GEO ]   PCAT18 [ EBI - ARRAY_EXPRESS ]   PCAT18 [ SEEK ]   PCAT18 [ MEM ]
Gene Expression Viewer (FireBrowse)PCAT18 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)728606
GTEX Portal (Tissue expression)PCAT18
Human Protein AtlasENSG00000265369-PCAT18 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PCAT18
DMDM Disease mutations728606
Blocks (Seattle)PCAT18
Human Protein Atlas [tissue]ENSG00000265369-PCAT18 [tissue]
Protein Interaction databases
FunCoupENSG00000265369
BioGRIDPCAT18
STRING (EMBL)PCAT18
ZODIACPCAT18
Ontologies - Pathways
Huge Navigator PCAT18 [HugePedia]
snp3D : Map Gene to Disease728606
BioCentury BCIQPCAT18
ClinGenPCAT18
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728606
Clinical trialPCAT18
Miscellaneous
canSAR (ICR)PCAT18 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCAT18
EVEXPCAT18
GoPubMedPCAT18
iHOPPCAT18
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:27:56 CET 2017

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