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PCAT2 (prostate cancer associated transcript 2 (non-protein coding))

Identity

Alias_symbol (synonym)PCA2
TCONS_00015167
Other aliasCARLo-4
HGNC (Hugo) PCAT2
LocusID (NCBI) 103164619
Atlas_Id 53887
Location 8q24.21  [Link to chromosome band 8q24]
Location_base_pair Starts at 127072694 and ends at 127082221 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCAT2   45089
Cards
Entrez_Gene (NCBI)PCAT2  103164619  prostate cancer associated transcript 2 (non-protein coding)
AliasesCARLo-4; PCA2; TCONS_00015167
GeneCards (Weizmann)PCAT2
Ensembl hg19 (Hinxton)ENSG00000253264 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000253264 [Gene_View]  chr8:127072694-127082221 [Contig_View]  PCAT2 [Vega]
ICGC DataPortalENSG00000253264
TCGA cBioPortalPCAT2
AceView (NCBI)PCAT2
Genatlas (Paris)PCAT2
WikiGenes103164619
SOURCE (Princeton)PCAT2
Genetics Home Reference (NIH)PCAT2
Genomic and cartography
GoldenPath hg38 (UCSC)PCAT2  -     chr8:127072694-127082221 -  8q24.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCAT2  -     8q24.21   [Description]    (hg19-Feb_2009)
EnsemblPCAT2 - 8q24.21 [CytoView hg19]  PCAT2 - 8q24.21 [CytoView hg38]
Mapping of homologs : NCBIPCAT2 [Mapview hg19]  PCAT2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BU852210
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCAT2
Cluster EST : UnigeneHs.571401 [ NCBI ]
CGAP (NCI)Hs.571401
Alternative Splicing GalleryENSG00000253264
Gene ExpressionPCAT2 [ NCBI-GEO ]   PCAT2 [ EBI - ARRAY_EXPRESS ]   PCAT2 [ SEEK ]   PCAT2 [ MEM ]
Gene Expression Viewer (FireBrowse)PCAT2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)103164619
GTEX Portal (Tissue expression)PCAT2
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PCAT2
DMDM Disease mutations103164619
Blocks (Seattle)PCAT2
Human Protein AtlasENSG00000253264
Protein Interaction databases
FunCoupENSG00000253264
BioGRIDPCAT2
STRING (EMBL)PCAT2
ZODIACPCAT2
Ontologies - Pathways
Huge Navigator PCAT2 [HugePedia]
snp3D : Map Gene to Disease103164619
BioCentury BCIQPCAT2
ClinGenPCAT2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD103164619
Clinical trialPCAT2
Miscellaneous
canSAR (ICR)PCAT2 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCAT2
EVEXPCAT2
GoPubMedPCAT2
iHOPPCAT2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 17:10:09 CEST 2017

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