Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PCAT4 (prostate cancer associated transcript 4 (non-protein coding))

Identity

Alias_symbol (synonym)GDEP
PCAN1
PCA4
Other alias
HGNC (Hugo) PCAT4
LocusID (NCBI) 118425
Atlas_Id 40699
Location 4q21.21  [Link to chromosome band 4q21]
Location_base_pair Starts at 79827471 and ends at 79863247 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PCAT4 (4q21.21) / PRDM8 (4q21.21)PCAT4 (4q21.21) / SPTAN1 (9q34.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCAT4   24853
Cards
Entrez_Gene (NCBI)PCAT4  118425  prostate cancer associated transcript 4 (non-protein coding)
AliasesGDEP; PCA4; PCAN1
GeneCards (Weizmann)PCAT4
Ensembl hg19 (Hinxton)ENSG00000251321 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000251321 [Gene_View]  chr4:79827471-79863247 [Contig_View]  PCAT4 [Vega]
ICGC DataPortalENSG00000251321
TCGA cBioPortalPCAT4
AceView (NCBI)PCAT4
Genatlas (Paris)PCAT4
WikiGenes118425
SOURCE (Princeton)PCAT4
Genetics Home Reference (NIH)PCAT4
Genomic and cartography
GoldenPath hg38 (UCSC)PCAT4  -     chr4:79827471-79863247 +  4q21.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCAT4  -     4q21.21   [Description]    (hg19-Feb_2009)
EnsemblPCAT4 - 4q21.21 [CytoView hg19]  PCAT4 - 4q21.21 [CytoView hg38]
Mapping of homologs : NCBIPCAT4 [Mapview hg19]  PCAT4 [Mapview hg38]
OMIM609717   
Gene and transcription
Genbank (Entrez)AF388200 AF462307 AK056825 BC105591 BC125139
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCAT4
Cluster EST : UnigeneHs.104215 [ NCBI ]
CGAP (NCI)Hs.104215
Alternative Splicing GalleryENSG00000251321
Gene ExpressionPCAT4 [ NCBI-GEO ]   PCAT4 [ EBI - ARRAY_EXPRESS ]   PCAT4 [ SEEK ]   PCAT4 [ MEM ]
Gene Expression Viewer (FireBrowse)PCAT4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)118425
GTEX Portal (Tissue expression)PCAT4
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PCAT4
DMDM Disease mutations118425
Blocks (Seattle)PCAT4
Human Protein AtlasENSG00000251321
HPRD17035
IPIIPI00063937   
Protein Interaction databases
FunCoupENSG00000251321
BioGRIDPCAT4
STRING (EMBL)PCAT4
ZODIACPCAT4
Ontologies - Pathways
Huge Navigator PCAT4 [HugePedia]
snp3D : Map Gene to Disease118425
BioCentury BCIQPCAT4
ClinGenPCAT4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD118425
Clinical trialPCAT4
Miscellaneous
canSAR (ICR)PCAT4 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCAT4
EVEXPCAT4
GoPubMedPCAT4
iHOPPCAT4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 14:02:46 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.