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PCAT5 (prostate cancer associated transcript 5)

Identity

Alias (NCBI)LINC01452
TPCAT-10-36067
HGNC (Hugo) PCAT5
HGNC Alias symbTPCAT-10-36067
HGNC Previous nameLINC01452
HGNC Previous namelong intergenic non-protein coding RNA 1452
 prostate cancer associated transcript 5 (non-protein coding)
LocusID (NCBI) 102578074
Atlas_Id 53750
Location 10p11.21  [Link to chromosome band 10p11]
Location_base_pair Starts at 35778302 and ends at 35800920 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)PCAT5   48665
Cards
Entrez_Gene (NCBI)PCAT5    prostate cancer associated transcript 5
AliasesLINC01452; TPCAT-10-36067
GeneCards (Weizmann)PCAT5
Ensembl hg19 (Hinxton)ENSG00000280719 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000280719 [Gene_View]  ENSG00000280719 [Sequence]  chr10:35778302-35800920 [Contig_View]  PCAT5 [Vega]
ICGC DataPortalENSG00000280719
TCGA cBioPortalPCAT5
AceView (NCBI)PCAT5
Genatlas (Paris)PCAT5
SOURCE (Princeton)PCAT5
Genetics Home Reference (NIH)PCAT5
Genomic and cartography
GoldenPath hg38 (UCSC)PCAT5  -     chr10:35778302-35800920 +  10p11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCAT5  -     10p11.21   [Description]    (hg19-Feb_2009)
GoldenPathPCAT5 - 10p11.21 [CytoView hg19]  PCAT5 - 10p11.21 [CytoView hg38]
ImmunoBaseENSG00000280719
Genome Data Viewer NCBIPCAT5 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)KF154780
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)PCAT5
Gene ExpressionPCAT5 [ NCBI-GEO ]   PCAT5 [ EBI - ARRAY_EXPRESS ]   PCAT5 [ SEEK ]   PCAT5 [ MEM ]
Gene Expression Viewer (FireBrowse)PCAT5 [ Firebrowse - Broad ]
GenevisibleExpression of PCAT5 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)102578074
GTEX Portal (Tissue expression)PCAT5
Human Protein AtlasENSG00000280719-PCAT5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PCAT5
Human Protein Atlas [tissue]ENSG00000280719-PCAT5 [tissue]
Protein Interaction databases
BioGRIDPCAT5
STRING (EMBL)PCAT5
ZODIACPCAT5
Ontologies - Pathways
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXPCAT5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:24:29 CEST 2021

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