Atlas of Genetics and Cytogenetics in Oncology and Haematology

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PCAT5 (prostate cancer associated transcript 5)


Alias (NCBI)LINC01452
HGNC Alias symbTPCAT-10-36067
HGNC Previous nameLINC01452
HGNC Previous namelong intergenic non-protein coding RNA 1452
 prostate cancer associated transcript 5 (non-protein coding)
LocusID (NCBI) 102578074
Atlas_Id 53750
Location 10p11.21  [Link to chromosome band 10p11]
Location_base_pair Starts at 35778302 and ends at 35800920 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)


Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

HGNC (Hugo)PCAT5   48665
Entrez_Gene (NCBI)PCAT5    prostate cancer associated transcript 5
AliasesLINC01452; TPCAT-10-36067
GeneCards (Weizmann)PCAT5
Ensembl hg19 (Hinxton)ENSG00000280719 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000280719 [Gene_View]  ENSG00000280719 [Sequence]  chr10:35778302-35800920 [Contig_View]  PCAT5 [Vega]
ICGC DataPortalENSG00000280719
TCGA cBioPortalPCAT5
Genatlas (Paris)PCAT5
SOURCE (Princeton)PCAT5
Genetics Home Reference (NIH)PCAT5
Genomic and cartography
GoldenPath hg38 (UCSC)PCAT5  -     chr10:35778302-35800920 +  10p11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCAT5  -     10p11.21   [Description]    (hg19-Feb_2009)
GoldenPathPCAT5 - 10p11.21 [CytoView hg19]  PCAT5 - 10p11.21 [CytoView hg38]
Genome Data Viewer NCBIPCAT5 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)KF154780
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)PCAT5
Gene ExpressionPCAT5 [ NCBI-GEO ]   PCAT5 [ EBI - ARRAY_EXPRESS ]   PCAT5 [ SEEK ]   PCAT5 [ MEM ]
Gene Expression Viewer (FireBrowse)PCAT5 [ Firebrowse - Broad ]
GenevisibleExpression of PCAT5 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)102578074
GTEX Portal (Tissue expression)PCAT5
Human Protein AtlasENSG00000280719-PCAT5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PCAT5
Human Protein Atlas [tissue]ENSG00000280719-PCAT5 [tissue]
Protein Interaction databases
Ontologies - Pathways
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:24:29 CEST 2021

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