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PCAT5 (prostate cancer associated transcript 5 (non-protein coding))

Identity

Alias_namesLINC01452
long intergenic non-protein coding RNA 1452
Alias_symbol (synonym)TPCAT-10-36067
Other alias
HGNC (Hugo) PCAT5
LocusID (NCBI) 102578074
Atlas_Id 53750
Location 10p11.21  [Link to chromosome band 10p11]
Location_base_pair Starts at 35778302 and ends at 35800920 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCAT5   48665
Cards
Entrez_Gene (NCBI)PCAT5  102578074  prostate cancer associated transcript 5 (non-protein coding)
AliasesLINC01452; TPCAT-10-36067
GeneCards (Weizmann)PCAT5
Ensembl hg19 (Hinxton)ENSG00000280719 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000280719 [Gene_View]  chr10:35778302-35800920 [Contig_View]  PCAT5 [Vega]
ICGC DataPortalENSG00000280719
TCGA cBioPortalPCAT5
AceView (NCBI)PCAT5
Genatlas (Paris)PCAT5
WikiGenes102578074
SOURCE (Princeton)PCAT5
Genetics Home Reference (NIH)PCAT5
Genomic and cartography
GoldenPath hg38 (UCSC)PCAT5  -     chr10:35778302-35800920 +  10p11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCAT5  -     10p11.21   [Description]    (hg19-Feb_2009)
EnsemblPCAT5 - 10p11.21 [CytoView hg19]  PCAT5 - 10p11.21 [CytoView hg38]
Mapping of homologs : NCBIPCAT5 [Mapview hg19]  PCAT5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)KF154780
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCAT5
Alternative Splicing GalleryENSG00000280719
Gene ExpressionPCAT5 [ NCBI-GEO ]   PCAT5 [ EBI - ARRAY_EXPRESS ]   PCAT5 [ SEEK ]   PCAT5 [ MEM ]
Gene Expression Viewer (FireBrowse)PCAT5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)102578074
GTEX Portal (Tissue expression)PCAT5
Human Protein AtlasENSG00000280719-PCAT5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PCAT5
DMDM Disease mutations102578074
Blocks (Seattle)PCAT5
Human Protein Atlas [tissue]ENSG00000280719-PCAT5 [tissue]
Protein Interaction databases
FunCoupENSG00000280719
BioGRIDPCAT5
STRING (EMBL)PCAT5
ZODIACPCAT5
Ontologies - Pathways
Huge Navigator PCAT5 [HugePedia]
snp3D : Map Gene to Disease102578074
BioCentury BCIQPCAT5
ClinGenPCAT5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102578074
Clinical trialPCAT5
Miscellaneous
canSAR (ICR)PCAT5 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCAT5
EVEXPCAT5
GoPubMedPCAT5
iHOPPCAT5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:27:57 CET 2017

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