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PCAT7 (prostate cancer associated transcript 7)

Identity

Alias (NCBI)PCAN-R2
HGNC (Hugo) PCAT7
HGNC Alias symbPCAN-R2
HGNC Alias nameprostate cancer-associated noncoding RNA 2
HGNC Previous nameprostate cancer associated transcript 7 (non-protein coding)
LocusID (NCBI) 101928099
Atlas_Id 54842
Location 9q22.32  [Link to chromosome band 9q22]
Location_base_pair Starts at 94555045 and ends at 94568756 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)PCAT7   48824
Cards
Entrez_Gene (NCBI)PCAT7    prostate cancer associated transcript 7
AliasesPCAN-R2
GeneCards (Weizmann)PCAT7
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr9:94555045-94568756 [Contig_View]  PCAT7 [Vega]
TCGA cBioPortalPCAT7
AceView (NCBI)PCAT7
Genatlas (Paris)PCAT7
SOURCE (Princeton)PCAT7
Genetics Home Reference (NIH)PCAT7
Genomic and cartography
GoldenPath hg38 (UCSC)PCAT7  -     chr9:94555045-94568756 +  9q22.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCAT7  -     9q22.32   [Description]    (hg19-Feb_2009)
GoldenPathPCAT7 - 9q22.32 [CytoView hg19]  PCAT7 - 9q22.32 [CytoView hg38]
Genome Data Viewer NCBIPCAT7 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK123066 BI196098 CF146916 HY050400 OA989345
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)PCAT7
Gene ExpressionPCAT7 [ NCBI-GEO ]   PCAT7 [ EBI - ARRAY_EXPRESS ]   PCAT7 [ SEEK ]   PCAT7 [ MEM ]
Gene Expression Viewer (FireBrowse)PCAT7 [ Firebrowse - Broad ]
GenevisibleExpression of PCAT7 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)101928099
GTEX Portal (Tissue expression)PCAT7
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PCAT7
Protein Interaction databases
BioGRIDPCAT7
STRING (EMBL)PCAT7
ZODIACPCAT7
Ontologies - Pathways
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXPCAT7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:24:29 CEST 2021

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