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PCBP1-AS1 (PCBP1 antisense RNA 1)

Identity

Alias (NCBI)-
HGNC (Hugo) PCBP1-AS1
HGNC Previous namePCBP1 antisense RNA 1 (non-protein coding)
LocusID (NCBI) 400960
Atlas_Id 71690
Location 2p13.3  [Link to chromosome band 2p13]
Location_base_pair Starts at 69962263 and ends at 70087015 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PCBP1-AS1 (2p13.3) / PCBP1-AS1 (2p13.3)PCBP1-AS1 (2p13.3) / RNF8 (6p21.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PCBP1-AS1   42948
Cards
Entrez_Gene (NCBI)PCBP1-AS1    PCBP1 antisense RNA 1
Aliases
GeneCards (Weizmann)PCBP1-AS1
Ensembl hg19 (Hinxton)ENSG00000179818 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179818 [Gene_View]  ENSG00000179818 [Sequence]  chr2:69962263-70087015 [Contig_View]  PCBP1-AS1 [Vega]
ICGC DataPortalENSG00000179818
TCGA cBioPortalPCBP1-AS1
AceView (NCBI)PCBP1-AS1
Genatlas (Paris)PCBP1-AS1
SOURCE (Princeton)PCBP1-AS1
Genetics Home Reference (NIH)PCBP1-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)PCBP1-AS1  -     chr2:69962263-70087015 -  2p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCBP1-AS1  -     2p13.3   [Description]    (hg19-Feb_2009)
GoldenPathPCBP1-AS1 - 2p13.3 [CytoView hg19]  PCBP1-AS1 - 2p13.3 [CytoView hg38]
ImmunoBaseENSG00000179818
genome Data Viewer NCBIPCBP1-AS1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK056822 AK098230 AK308634 BC040598
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCBP1-AS1
Alternative Splicing GalleryENSG00000179818
Gene ExpressionPCBP1-AS1 [ NCBI-GEO ]   PCBP1-AS1 [ EBI - ARRAY_EXPRESS ]   PCBP1-AS1 [ SEEK ]   PCBP1-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)PCBP1-AS1 [ Firebrowse - Broad ]
GenevisibleExpression of PCBP1-AS1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)400960
GTEX Portal (Tissue expression)PCBP1-AS1
Human Protein AtlasENSG00000179818-PCBP1-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PCBP1-AS1
Blocks (Seattle)PCBP1-AS1
Human Protein Atlas [tissue]ENSG00000179818-PCBP1-AS1 [tissue]
Protein Interaction databases
BioGRIDPCBP1-AS1
STRING (EMBL)PCBP1-AS1
ZODIACPCBP1-AS1
Ontologies - Pathways
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCBP1-AS1
EVEXPCBP1-AS1
GoPubMedPCBP1-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Sat Dec 5 17:21:53 CET 2020
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