Atlas of Genetics and Cytogenetics in Oncology and Haematology

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PCBP2 (poly(rC) binding protein 2)

Identity

Other namesHNRPE2
hnRNP-E2
HGNC (Hugo) PCBP2
LocusID (NCBI) 5094
Location 12q13.13
Location_base_pair Starts at 53845886 and ends at 53874946 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PCBP2   8648
Entrez_Gene (NCBI)PCBP2  5094  poly(rC) binding protein 2
Cards
GeneCards (Weizmann)PCBP2
Ensembl (Hinxton)ENSG00000197111 [Gene_View]  chr12:53845886-53874946 [Contig_View]  PCBP2 [Vega]
AceView (NCBI)PCBP2
Genatlas (Paris)PCBP2
SOURCE (Stanford)NM_001098620 NM_001128911 NM_001128912 NM_001128913 NM_001128914 NM_005016 NM_031989
Genomic and cartography
GoldenPath (UCSC)PCBP2  -  12q13.13   chr12:53845886-53874946 +  12q13.13   [Description]    (hg19-Feb_2009)
EnsemblPCBP2 - 12q13.13 [CytoView]
Mapping of homologs : NCBIPCBP2 [Mapview]
OMIM601210   
Gene and transcription
Genbank (Entrez)AB188306 AB208825 AK023529 AK123458 AK130583
RefSeq transcript (SRS)NM_001098620 NM_001128911 NM_001128912 NM_001128913 NM_001128914 NM_005016 NM_031989
RefSeq transcript (Entrez)NM_001098620 NM_001128911 NM_001128912 NM_001128913 NM_001128914 NM_005016 NM_031989
RefSeq genomic (SRS)AC_000144 NC_000012 NC_018923 NT_029419 NW_001838059 NW_004078075
RefSeq genomic (Entrez)AC_000144 NC_000012 NC_018923 NT_029419 NW_001838059 NW_004078075
Consensus coding sequences : CCDS (NCBI)PCBP2
Cluster EST : UnigeneHs.546271 [ SRS ] Hs.546271 [ NCBI ]
CGAP (NCI)Hs.546271
Alternative Splicing : Fast-db (Paris)GSHG0006693
Alternative Splicing GalleryENSG00000197111
Gene ExpressionPCBP2 [ NCBI-GEO ]   PCBP2 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15366 (SRS) Q15366 (Uniprot)
NextProtQ15366
With graphics : InterProQ15366
Splice isoforms : SwissVarQ15366(Swissvar)
Domaine pattern : Prosite (SRS)KH_TYPE_1 (PS50084)   
Domaine pattern : Prosite (Expaxy)KH_TYPE_1 (PS50084)   
Domains : Interpro (SRS)KH_dom    KH_dom_type_1   
Domains : Interpro (EBI)KH_dom    KH_dom_type_1   
Related proteins : CluSTrQ15366
Domain families : Pfam (SRS)KH_1 (PF00013)   
Domain families : Pfam (Sanger)KH_1 (PF00013)   
Domain families : Pfam (NCBI)pfam00013   
Domain families : Smart (EMBL)KH (SM00322)  
DMDM5094
Blocks (Seattle)Q15366
PDB (SRS)2AXY    2JZX    2P2R    2PQU    2PY9   
PDB (PDBSum)2AXY    2JZX    2P2R    2PQU    2PY9   
PDB (IMB)2AXY    2JZX    2P2R    2PQU    2PY9   
PDB (RSDB)2AXY    2JZX    2P2R    2PQU    2PY9   
Human Protein AtlasENSG00000197111
HPRD03129
IPIIPI00216689   IPI01009186   IPI00788837   IPI01022076   IPI01021465   IPI01021049   IPI01021216   IPI01020805   IPI01020913   IPI01022901   IPI01022480   IPI01022190   IPI00790627   IPI00791223   IPI00900327   IPI01021922   IPI00470509   IPI00796337   IPI00012066   
Protein Interaction databases
DIP (DOE-UCLA)Q15366
IntAct (EBI)Q15366
FunCoupENSG00000197111
REACTOMEPCBP2
Protein Interaction Database5094
BioGRIDPCBP2
InParanoidQ15366
Interologous Interaction database Q15366
IntegromeDBPCBP2
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)PCBP2
SNP (GeneSNP Utah)PCBP2
SNP : HGBasePCBP2
Genetic variants : HAPMAPPCBP2
Somatic Mutations in Cancer : COSMICPCBP2 
CONAN: Copy Number AnalysisPCBP2 
Mutations and Diseases : HGMDPCBP2
OMIM601210   
GENETests601210   
Disease Genetic AssociationPCBP2
Huge Navigator PCBP2 [HugePedia]  PCBP2 [HugeCancerGEM]
Genomic VariantsPCBP2  PCBP2 [DGVbeta]
snp3D : Map Gene to Disease5094
General knowledge
Homologs : HomoloGenePCBP2
Homology/Alignments : Family Browser (UCSC)PCBP2
Phylogenetic Trees/Animal Genes : TreeFamPCBP2
Chemical/Protein Interactions : CTD5094
Chemical/Pharm GKB GenePA32987
Clinical trialPCBP2
Cancer Resource (Charite)ENSG00000197111
Ontology : AmiGOmRNA splicing, via spliceosome  DNA binding  RNA binding  protein binding  nucleus  nucleus  nucleoplasm  nucleolus  cytoplasm  cytoplasm  cytosol  RNA splicing  gene expression  mRNA metabolic process  enzyme binding  ribonucleoprotein complex  ubiquitin protein ligase binding  negative regulation of type I interferon production  proteasomal ubiquitin-dependent protein catabolic process  innate immune response  negative regulation of defense response to virus  defense response to virus  
Ontology : EGO-EBImRNA splicing, via spliceosome  DNA binding  RNA binding  protein binding  nucleus  nucleus  nucleoplasm  nucleolus  cytoplasm  cytoplasm  cytosol  RNA splicing  gene expression  mRNA metabolic process  enzyme binding  ribonucleoprotein complex  ubiquitin protein ligase binding  negative regulation of type I interferon production  proteasomal ubiquitin-dependent protein catabolic process  innate immune response  negative regulation of defense response to virus  defense response to virus  
Other databases
Probes
Litterature
PubMed87 Pubmed reference(s) in Entrez
PubGenePCBP2
iHOPPCBP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:45:28 CEST 2013
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