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PCBP3 (poly(rC) binding protein 3)

Identity

Alias_namespoly(rC)-binding protein 3
Other aliasALPHA-CP3
PCBP3-OT1
PCBP3OT
HGNC (Hugo) PCBP3
LocusID (NCBI) 54039
Atlas_Id 46649
Location 21q22.3  [Link to chromosome band 21q22]
Location_base_pair Starts at 45849961 and ends at 45942454 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SSU72 (1p36.33) / PCBP3 (21q22.3)TIAM1 (21q22.11) / PCBP3 (21q22.3)TIAM1 21q22.11 / PCBP3 21q22.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCBP3   8651
Cards
Entrez_Gene (NCBI)PCBP3  54039  poly(rC) binding protein 3
AliasesALPHA-CP3; PCBP3-OT1; PCBP3OT
GeneCards (Weizmann)PCBP3
Ensembl hg19 (Hinxton)ENSG00000183570 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183570 [Gene_View]  chr21:45849961-45942454 [Contig_View]  PCBP3 [Vega]
ICGC DataPortalENSG00000183570
TCGA cBioPortalPCBP3
AceView (NCBI)PCBP3
Genatlas (Paris)PCBP3
WikiGenes54039
SOURCE (Princeton)PCBP3
Genetics Home Reference (NIH)PCBP3
Genomic and cartography
GoldenPath hg38 (UCSC)PCBP3  -     chr21:45849961-45942454 +  21q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCBP3  -     21q22.3   [Description]    (hg19-Feb_2009)
EnsemblPCBP3 - 21q22.3 [CytoView hg19]  PCBP3 - 21q22.3 [CytoView hg38]
Mapping of homologs : NCBIPCBP3 [Mapview hg19]  PCBP3 [Mapview hg38]
OMIM608502   
Gene and transcription
Genbank (Entrez)AF176329 AK094301 AK126016 AK310131 AK310672
RefSeq transcript (Entrez)NM_001130141 NM_001348238 NM_001348239 NM_001348240 NM_001348241 NM_001348242 NM_001348243 NM_001348244 NM_001348245 NM_020528
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCBP3
Cluster EST : UnigeneHs.474049 [ NCBI ]
CGAP (NCI)Hs.474049
Alternative Splicing GalleryENSG00000183570
Gene ExpressionPCBP3 [ NCBI-GEO ]   PCBP3 [ EBI - ARRAY_EXPRESS ]   PCBP3 [ SEEK ]   PCBP3 [ MEM ]
Gene Expression Viewer (FireBrowse)PCBP3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54039
GTEX Portal (Tissue expression)PCBP3
Protein : pattern, domain, 3D structure
UniProt/SwissProtP57721   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP57721  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP57721
Splice isoforms : SwissVarP57721
PhosPhoSitePlusP57721
Domaine pattern : Prosite (Expaxy)KH_TYPE_1 (PS50084)   
Domains : Interpro (EBI)KH_dom    KH_dom_type_1   
Domain families : Pfam (Sanger)KH_1 (PF00013)   
Domain families : Pfam (NCBI)pfam00013   
Domain families : Smart (EMBL)KH (SM00322)  
Conserved Domain (NCBI)PCBP3
DMDM Disease mutations54039
Blocks (Seattle)PCBP3
SuperfamilyP57721
Human Protein AtlasENSG00000183570
Peptide AtlasP57721
HPRD10534
IPIIPI00027970   IPI00101278   IPI00410586   IPI00410587   IPI00167750   IPI01020677   IPI00550365   
Protein Interaction databases
DIP (DOE-UCLA)P57721
IntAct (EBI)P57721
FunCoupENSG00000183570
BioGRIDPCBP3
STRING (EMBL)PCBP3
ZODIACPCBP3
Ontologies - Pathways
QuickGOP57721
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding  double-stranded DNA binding  RNA binding  RNA binding  nucleus  cytosol  mRNA metabolic process  intracellular ribonucleoprotein complex  extracellular exosome  C-rich single-stranded DNA binding  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding  double-stranded DNA binding  RNA binding  RNA binding  nucleus  cytosol  mRNA metabolic process  intracellular ribonucleoprotein complex  extracellular exosome  C-rich single-stranded DNA binding  
NDEx NetworkPCBP3
Atlas of Cancer Signalling NetworkPCBP3
Wikipedia pathwaysPCBP3
Orthology - Evolution
OrthoDB54039
GeneTree (enSembl)ENSG00000183570
Phylogenetic Trees/Animal Genes : TreeFamPCBP3
HOVERGENP57721
HOGENOMP57721
Homologs : HomoloGenePCBP3
Homology/Alignments : Family Browser (UCSC)PCBP3
Gene fusions - Rearrangements
Fusion : MitelmanTIAM1/PCBP3 [21q22.11/21q22.3]  [t(21;21)(q22;q22)]  
Fusion: TCGATIAM1 21q22.11 PCBP3 21q22.3 HNSC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCBP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCBP3
dbVarPCBP3
ClinVarPCBP3
1000_GenomesPCBP3 
Exome Variant ServerPCBP3
ExAC (Exome Aggregation Consortium)PCBP3 (select the gene name)
Genetic variants : HAPMAP54039
Genomic Variants (DGV)PCBP3 [DGVbeta]
DECIPHERPCBP3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPCBP3 
Mutations
ICGC Data PortalPCBP3 
TCGA Data PortalPCBP3 
Broad Tumor PortalPCBP3
OASIS PortalPCBP3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCBP3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCBP3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCBP3
DgiDB (Drug Gene Interaction Database)PCBP3
DoCM (Curated mutations)PCBP3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCBP3 (select a term)
intoGenPCBP3
Cancer3DPCBP3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608502   
Orphanet
MedgenPCBP3
Genetic Testing Registry PCBP3
NextProtP57721 [Medical]
TSGene54039
GENETestsPCBP3
Huge Navigator PCBP3 [HugePedia]
snp3D : Map Gene to Disease54039
BioCentury BCIQPCBP3
ClinGenPCBP3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54039
Chemical/Pharm GKB GenePA32990
Clinical trialPCBP3
Miscellaneous
canSAR (ICR)PCBP3 (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCBP3
EVEXPCBP3
GoPubMedPCBP3
iHOPPCBP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:30:26 CEST 2017

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