Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PCBP4 (poly(rC) binding protein 4)

Identity

Alias_namespoly(rC)-binding protein 4
Alias_symbol (synonym)MCG10
LIP4
Other aliasCBP
HGNC (Hugo) PCBP4
LocusID (NCBI) 57060
Atlas_Id 41662
Location 3p21.2  [Link to chromosome band 3p21]
Location_base_pair Starts at 51957454 and ends at 51967466 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C1R (12p13.31) / PCBP4 (3p21.2)KAT6B (10q22.2) / PCBP4 (3p21.2)PCBP4 (3p21.2) / PCBP4 (3p21.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCBP4   8652
Cards
Entrez_Gene (NCBI)PCBP4  57060  poly(rC) binding protein 4
AliasesCBP; LIP4; MCG10
GeneCards (Weizmann)PCBP4
Ensembl hg19 (Hinxton)ENSG00000090097 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000090097 [Gene_View]  chr3:51957454-51967466 [Contig_View]  PCBP4 [Vega]
ICGC DataPortalENSG00000090097
TCGA cBioPortalPCBP4
AceView (NCBI)PCBP4
Genatlas (Paris)PCBP4
WikiGenes57060
SOURCE (Princeton)PCBP4
Genetics Home Reference (NIH)PCBP4
Genomic and cartography
GoldenPath hg38 (UCSC)PCBP4  -     chr3:51957454-51967466 -  3p21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCBP4  -     3p21.2   [Description]    (hg19-Feb_2009)
EnsemblPCBP4 - 3p21.2 [CytoView hg19]  PCBP4 - 3p21.2 [CytoView hg38]
Mapping of homologs : NCBIPCBP4 [Mapview hg19]  PCBP4 [Mapview hg38]
OMIM608503   
Gene and transcription
Genbank (Entrez)AF092441 AF141340 AF176330 AF257770 AF257771
RefSeq transcript (Entrez)NM_001174100 NM_020418 NM_033008 NM_033009 NM_033010
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCBP4
Cluster EST : UnigeneHs.20930 [ NCBI ]
CGAP (NCI)Hs.20930
Alternative Splicing GalleryENSG00000090097
Gene ExpressionPCBP4 [ NCBI-GEO ]   PCBP4 [ EBI - ARRAY_EXPRESS ]   PCBP4 [ SEEK ]   PCBP4 [ MEM ]
Gene Expression Viewer (FireBrowse)PCBP4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57060
GTEX Portal (Tissue expression)PCBP4
Protein : pattern, domain, 3D structure
UniProt/SwissProtP57723   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP57723  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP57723
Splice isoforms : SwissVarP57723
PhosPhoSitePlusP57723
Domaine pattern : Prosite (Expaxy)KH_TYPE_1 (PS50084)   
Domains : Interpro (EBI)KH_dom    KH_dom_type_1    PCBP4   
Domain families : Pfam (Sanger)KH_1 (PF00013)   
Domain families : Pfam (NCBI)pfam00013   
Domain families : Smart (EMBL)KH (SM00322)  
Conserved Domain (NCBI)PCBP4
DMDM Disease mutations57060
Blocks (Seattle)PCBP4
SuperfamilyP57723
Human Protein AtlasENSG00000090097
Peptide AtlasP57723
HPRD16343
IPIIPI00027973   IPI00386254   IPI00788617   IPI00385206   IPI00412511   IPI00006997   IPI00946372   IPI00947004   IPI00946687   IPI00945892   IPI00978070   IPI00946082   IPI00984041   IPI00945164   
Protein Interaction databases
DIP (DOE-UCLA)P57723
IntAct (EBI)P57723
FunCoupENSG00000090097
BioGRIDPCBP4
STRING (EMBL)PCBP4
ZODIACPCBP4
Ontologies - Pathways
QuickGOP57723
Ontology : AmiGODNA binding  RNA binding  RNA binding  mRNA 3'-UTR binding  cytosol  cytosol  DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest  intracellular ribonucleoprotein complex  regulation of mRNA stability  
Ontology : EGO-EBIDNA binding  RNA binding  RNA binding  mRNA 3'-UTR binding  cytosol  cytosol  DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest  intracellular ribonucleoprotein complex  regulation of mRNA stability  
NDEx NetworkPCBP4
Atlas of Cancer Signalling NetworkPCBP4
Wikipedia pathwaysPCBP4
Orthology - Evolution
OrthoDB57060
GeneTree (enSembl)ENSG00000090097
Phylogenetic Trees/Animal Genes : TreeFamPCBP4
HOVERGENP57723
HOGENOMP57723
Homologs : HomoloGenePCBP4
Homology/Alignments : Family Browser (UCSC)PCBP4
Gene fusions - Rearrangements
Fusion Cancer (Beijing)C1R [12p13.31]  -  PCBP4 [3p21.2]  [FUSC002248]
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCBP4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCBP4
dbVarPCBP4
ClinVarPCBP4
1000_GenomesPCBP4 
Exome Variant ServerPCBP4
ExAC (Exome Aggregation Consortium)PCBP4 (select the gene name)
Genetic variants : HAPMAP57060
Genomic Variants (DGV)PCBP4 [DGVbeta]
DECIPHERPCBP4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPCBP4 
Mutations
ICGC Data PortalPCBP4 
TCGA Data PortalPCBP4 
Broad Tumor PortalPCBP4
OASIS PortalPCBP4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCBP4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCBP4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCBP4
DgiDB (Drug Gene Interaction Database)PCBP4
DoCM (Curated mutations)PCBP4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCBP4 (select a term)
intoGenPCBP4
Cancer3DPCBP4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608503   
Orphanet
MedgenPCBP4
Genetic Testing Registry PCBP4
NextProtP57723 [Medical]
TSGene57060
GENETestsPCBP4
Target ValidationPCBP4
Huge Navigator PCBP4 [HugePedia]
snp3D : Map Gene to Disease57060
BioCentury BCIQPCBP4
ClinGenPCBP4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57060
Chemical/Pharm GKB GenePA32991
Clinical trialPCBP4
Miscellaneous
canSAR (ICR)PCBP4 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCBP4
EVEXPCBP4
GoPubMedPCBP4
iHOPPCBP4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 25 19:23:57 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.