Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PCDH11X (protocadherin 11 X-linked)

Identity

Alias_namesPCDH11
protocadherin 11
Alias_symbol (synonym)PCDH-X
PCDHX
PPP1R119
Other alias
HGNC (Hugo) PCDH11X
LocusID (NCBI) 27328
Atlas_Id 71695
Location Xq21.31  [Link to chromosome band Xq21]
Location_base_pair Starts at 91835461 and ends at 92623229 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PCDH11X (Xq21.31) / BTG3 (21q21.1)PCDH11X (Xq21.31) / TMC4 (19q13.42)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCDH11X   8656
Cards
Entrez_Gene (NCBI)PCDH11X  27328  protocadherin 11 X-linked
AliasesPCDH-X; PCDH11; PCDHX; PPP1R119
GeneCards (Weizmann)PCDH11X
Ensembl hg19 (Hinxton)ENSG00000102290 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000102290 [Gene_View]  chrX:91835461-92623229 [Contig_View]  PCDH11X [Vega]
ICGC DataPortalENSG00000102290
TCGA cBioPortalPCDH11X
AceView (NCBI)PCDH11X
Genatlas (Paris)PCDH11X
WikiGenes27328
SOURCE (Princeton)PCDH11X
Genetics Home Reference (NIH)PCDH11X
Genomic and cartography
GoldenPath hg38 (UCSC)PCDH11X  -     chrX:91835461-92623229 +  Xq21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCDH11X  -     Xq21.31   [Description]    (hg19-Feb_2009)
EnsemblPCDH11X - Xq21.31 [CytoView hg19]  PCDH11X - Xq21.31 [CytoView hg38]
Mapping of homologs : NCBIPCDH11X [Mapview hg19]  PCDH11X [Mapview hg38]
OMIM300246   
Gene and transcription
Genbank (Entrez)AB026187 AB026188 AB037747 AF206516 AF217288
RefSeq transcript (Entrez)NM_001168360 NM_001168361 NM_001168362 NM_001168363 NM_014522 NM_032967 NM_032968 NM_032969
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCDH11X
Cluster EST : UnigeneHs.655673 [ NCBI ]
CGAP (NCI)Hs.655673
Alternative Splicing GalleryENSG00000102290
Gene ExpressionPCDH11X [ NCBI-GEO ]   PCDH11X [ EBI - ARRAY_EXPRESS ]   PCDH11X [ SEEK ]   PCDH11X [ MEM ]
Gene Expression Viewer (FireBrowse)PCDH11X [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27328
GTEX Portal (Tissue expression)PCDH11X
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BZA7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BZA7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BZA7
Splice isoforms : SwissVarQ9BZA7
PhosPhoSitePlusQ9BZA7
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_CS    Cadherin_N    Protocadherin   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_2 (PF08266)    Protocadherin (PF08374)   
Domain families : Pfam (NCBI)pfam00028    pfam08266    pfam08374   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)PCDH11X
DMDM Disease mutations27328
Blocks (Seattle)PCDH11X
SuperfamilyQ9BZA7
Human Protein AtlasENSG00000102290
Peptide AtlasQ9BZA7
HPRD02215
IPIIPI00410049   IPI00018303   IPI00018313   IPI00514457   IPI00643227   IPI00747762   IPI00005031   IPI00844183   IPI00514303   IPI00816501   IPI00871855   
Protein Interaction databases
DIP (DOE-UCLA)Q9BZA7
IntAct (EBI)Q9BZA7
FunCoupENSG00000102290
BioGRIDPCDH11X
STRING (EMBL)PCDH11X
ZODIACPCDH11X
Ontologies - Pathways
QuickGOQ9BZA7
Ontology : AmiGOcalcium ion binding  plasma membrane  integral component of plasma membrane  homophilic cell adhesion via plasma membrane adhesion molecules  negative regulation of phosphatase activity  extracellular exosome  
Ontology : EGO-EBIcalcium ion binding  plasma membrane  integral component of plasma membrane  homophilic cell adhesion via plasma membrane adhesion molecules  negative regulation of phosphatase activity  extracellular exosome  
NDEx NetworkPCDH11X
Atlas of Cancer Signalling NetworkPCDH11X
Wikipedia pathwaysPCDH11X
Orthology - Evolution
OrthoDB27328
GeneTree (enSembl)ENSG00000102290
Phylogenetic Trees/Animal Genes : TreeFamPCDH11X
HOVERGENQ9BZA7
HOGENOMQ9BZA7
Homologs : HomoloGenePCDH11X
Homology/Alignments : Family Browser (UCSC)PCDH11X
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCDH11X [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCDH11X
dbVarPCDH11X
ClinVarPCDH11X
1000_GenomesPCDH11X 
Exome Variant ServerPCDH11X
ExAC (Exome Aggregation Consortium)PCDH11X (select the gene name)
Genetic variants : HAPMAP27328
Genomic Variants (DGV)PCDH11X [DGVbeta]
DECIPHERPCDH11X [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPCDH11X 
Mutations
ICGC Data PortalPCDH11X 
TCGA Data PortalPCDH11X 
Broad Tumor PortalPCDH11X
OASIS PortalPCDH11X [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCDH11X  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCDH11X
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch PCDH11X
DgiDB (Drug Gene Interaction Database)PCDH11X
DoCM (Curated mutations)PCDH11X (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCDH11X (select a term)
intoGenPCDH11X
Cancer3DPCDH11X(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300246   
Orphanet
MedgenPCDH11X
Genetic Testing Registry PCDH11X
NextProtQ9BZA7 [Medical]
TSGene27328
GENETestsPCDH11X
Target ValidationPCDH11X
Huge Navigator PCDH11X [HugePedia]
snp3D : Map Gene to Disease27328
BioCentury BCIQPCDH11X
ClinGenPCDH11X
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27328
Chemical/Pharm GKB GenePA32996
Clinical trialPCDH11X
Miscellaneous
canSAR (ICR)PCDH11X (select the gene name)
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCDH11X
EVEXPCDH11X
GoPubMedPCDH11X
iHOPPCDH11X
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:35:37 CEST 2017

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