Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PCDH11Y (protocadherin 11 Y-linked)

Identity

Alias_namesPCDH22
protocadherin 22
Alias_symbol (synonym)PCDHY
Other aliasPCDH-PC
PCDHX
HGNC (Hugo) PCDH11Y
LocusID (NCBI) 83259
Atlas_Id 46400
Location Yp11.2  [Link to chromosome band Yp11]
Location_base_pair Starts at 5000226 and ends at 5105598 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MICB (6p21.33) / PCDH11Y (Yp11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCDH11Y   15813
Cards
Entrez_Gene (NCBI)PCDH11Y  83259  protocadherin 11 Y-linked
AliasesPCDH-PC; PCDH22; PCDHX; PCDHY
GeneCards (Weizmann)PCDH11Y
Ensembl hg19 (Hinxton)ENSG00000099715 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000099715 [Gene_View]  chrY:5000226-5105598 [Contig_View]  PCDH11Y [Vega]
ICGC DataPortalENSG00000099715
TCGA cBioPortalPCDH11Y
AceView (NCBI)PCDH11Y
Genatlas (Paris)PCDH11Y
WikiGenes83259
SOURCE (Princeton)PCDH11Y
Genetics Home Reference (NIH)PCDH11Y
Genomic and cartography
GoldenPath hg38 (UCSC)PCDH11Y  -     chrY:5000226-5105598 +  Yp11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCDH11Y  -     Yp11.2   [Description]    (hg19-Feb_2009)
EnsemblPCDH11Y - Yp11.2 [CytoView hg19]  PCDH11Y - Yp11.2 [CytoView hg38]
Mapping of homologs : NCBIPCDH11Y [Mapview hg19]  PCDH11Y [Mapview hg38]
OMIM400022   
Gene and transcription
Genbank (Entrez)###############################################################################################################################################################################################################################################################
RefSeq transcript (Entrez)NM_001278619 NM_032971 NM_032972 NM_032973
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCDH11Y
Cluster EST : UnigeneHs.689831 [ NCBI ]
CGAP (NCI)Hs.689831
Alternative Splicing GalleryENSG00000099715
Gene ExpressionPCDH11Y [ NCBI-GEO ]   PCDH11Y [ EBI - ARRAY_EXPRESS ]   PCDH11Y [ SEEK ]   PCDH11Y [ MEM ]
Gene Expression Viewer (FireBrowse)PCDH11Y [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83259
GTEX Portal (Tissue expression)PCDH11Y
Human Protein AtlasENSG00000099715-PCDH11Y [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BZA8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BZA8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BZA8
Splice isoforms : SwissVarQ9BZA8
PhosPhoSitePlusQ9BZA8
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_CS    Cadherin_N    Protocadherin   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_2 (PF08266)    Protocadherin (PF08374)   
Domain families : Pfam (NCBI)pfam00028    pfam08266    pfam08374   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)PCDH11Y
DMDM Disease mutations83259
Blocks (Seattle)PCDH11Y
SuperfamilyQ9BZA8
Human Protein Atlas [tissue]ENSG00000099715-PCDH11Y [tissue]
Peptide AtlasQ9BZA8
HPRD11847
IPIIPI00218387   IPI00018320   IPI00104649   IPI00745536   IPI00816381   IPI00816542   IPI00985103   
Protein Interaction databases
DIP (DOE-UCLA)Q9BZA8
IntAct (EBI)Q9BZA8
FunCoupENSG00000099715
BioGRIDPCDH11Y
STRING (EMBL)PCDH11Y
ZODIACPCDH11Y
Ontologies - Pathways
QuickGOQ9BZA8
Ontology : AmiGOcalcium ion binding  plasma membrane  homophilic cell adhesion via plasma membrane adhesion molecules  integral component of membrane  
Ontology : EGO-EBIcalcium ion binding  plasma membrane  homophilic cell adhesion via plasma membrane adhesion molecules  integral component of membrane  
NDEx NetworkPCDH11Y
Atlas of Cancer Signalling NetworkPCDH11Y
Wikipedia pathwaysPCDH11Y
Orthology - Evolution
OrthoDB83259
GeneTree (enSembl)ENSG00000099715
Phylogenetic Trees/Animal Genes : TreeFamPCDH11Y
HOVERGENQ9BZA8
HOGENOMQ9BZA8
Homologs : HomoloGenePCDH11Y
Homology/Alignments : Family Browser (UCSC)PCDH11Y
Gene fusions - Rearrangements
Tumor Fusion PortalPCDH11Y
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCDH11Y [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCDH11Y
dbVarPCDH11Y
ClinVarPCDH11Y
1000_GenomesPCDH11Y 
Exome Variant ServerPCDH11Y
ExAC (Exome Aggregation Consortium)ENSG00000099715
GNOMAD BrowserENSG00000099715
Genetic variants : HAPMAP83259
Genomic Variants (DGV)PCDH11Y [DGVbeta]
DECIPHERPCDH11Y [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPCDH11Y 
Mutations
ICGC Data PortalPCDH11Y 
TCGA Data PortalPCDH11Y 
Broad Tumor PortalPCDH11Y
OASIS PortalPCDH11Y [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCDH11Y  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCDH11Y
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCDH11Y
DgiDB (Drug Gene Interaction Database)PCDH11Y
DoCM (Curated mutations)PCDH11Y (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCDH11Y (select a term)
intoGenPCDH11Y
Cancer3DPCDH11Y(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM400022   
Orphanet
DisGeNETPCDH11Y
MedgenPCDH11Y
Genetic Testing Registry PCDH11Y
NextProtQ9BZA8 [Medical]
TSGene83259
GENETestsPCDH11Y
Target ValidationPCDH11Y
Huge Navigator PCDH11Y [HugePedia]
snp3D : Map Gene to Disease83259
BioCentury BCIQPCDH11Y
ClinGenPCDH11Y
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83259
Chemical/Pharm GKB GenePA32997
Clinical trialPCDH11Y
Miscellaneous
canSAR (ICR)PCDH11Y (select the gene name)
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCDH11Y
EVEXPCDH11Y
GoPubMedPCDH11Y
iHOPPCDH11Y
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:27:59 CET 2017

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