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PCDH11Y (protocadherin 11 Y-linked)

Identity

Other namesPCDH-PC
PCDH22
PCDHY
HGNC (Hugo) PCDH11Y
Location Yp11.2
Location_base_pair Starts at 4928267 and ends at 5033485 bp from pter ( according to hg18-March_2006)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PCDH11Y   15813
Entrez_Gene (NCBI)PCDH11Y  83259  protocadherin 11 Y-linked
Cards
GeneCards (Weizmann)PCDH11Y
Ensembl (Hinxton)ENSG00000099715 [Gene_View]  PCDH11Y [Vega]
AceView (NCBI)PCDH11Y
Genatlas (Paris)PCDH11Y
euGene (Indiana)83259
SOURCE (Stanford)NM_032971 NM_032972 NM_032973
Gene Expression (Array Express) ENSG00000099715
Genomic and cartography
GoldenPath (UCSC)PCDH11Y  -  Yp11.2   chrY:4928267-5033485 +  Yp11.2   [Description]    (hg18-March_2006)
EnsemblPCDH11Y - Yp11.2 [CytoView]
Mapping of homologs : NCBIPCDH11Y [Mapview]
OMIM400022   
Gene and transcription
Gene : Genbank (Entrez)AA865592 AF277053 AF332216 AF332217 AJ276803
Reference sequence (RefSeq transcript) :SRSNM_032971 NM_032972 NM_032973
Reference transcript : EntrezNM_032971 NM_032972 NM_032973
RefSeq genomic : SRSAC_000066 AC_000156 NC_000024 NG_011652 NT_011896 NW_001842422 NW_927715
RefSeq genomic : EntrezAC_000066 AC_000156 NC_000024 NG_011652 NT_011896 NW_001842422 NW_927715
Consensus coding sequences : CCDS NCBIPCDH11Y
Cluster EST : UnigeneHs.661308 [ SRS ] Hs.661308 [ NCBI ]
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtQ9BZA8 (SRS) Q9BZA8 (Expasy) Q9BZA8 (Uniprot)
With graphics : InterProQ9BZA8
Splice isoforms : VarSplice FASTAQ9BZA8(VarSplice FASTA)
Domaine pattern : Prosite (SRS)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domain pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (SRS)Cadherin    Cadherin-like    Cadherin_CS    Cadherin_N    Protocadherin   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_CS    Cadherin_N    Protocadherin   
Related proteins : CluSTrQ9BZA8
Domain families : Pfam SRSCadherin (PF00028)    Cadherin_2 (PF08266)    Protocadherin (PF08374)   
Domain families : Pfam SangerCadherin (PF00028)    Cadherin_2 (PF08266)    Protocadherin (PF08374)   
Domain families : Pfam NCBIpfam00028    pfam08266    pfam08374   
Domain families : Smart EMBLCA (SM00112)  
Blocks (Seattle)Q9BZA8
Crystal structure of protein : PDB SRS
Crystal structure of protein : PDBSum
Crystal structure of protein : IMB
Crystal structure of protein : PDB RSDB
HPRD11847
Protein Interaction databases
DIP (DOE-UCLA)Q9BZA8
IntAct (EBI)Q9BZA8
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBIPCDH11Y
SNP : GeneSNP UtahPCDH11Y
SNP : HGBasePCDH11Y
Genetic variants : HAPMAPPCDH11Y
Mutations and Diseases : HGMDPCDH11Y
Hereditary diseases : OMIM400022   
Hereditary diseases : GENETests400022   
Diseases : Genetic AssociationPCDH11Y
General knowledge
Homologs : HomoloGenePCDH11Y
Homology/Alignments : Family Browser UCSCPCDH11Y
Phylogenetic Trees/Animal Genes : TreeFamPCDH11Y
Chemical/Protein Interactions : CTD83259
Keywords Ontology : AmiGOcalcium ion binding  protein binding  plasma membrane  cell adhesion  homophilic cell adhesion  integral to membrane  
Keywords Ontology : EGO-EBIcalcium ion binding  protein binding  plasma membrane  cell adhesion  homophilic cell adhesion  integral to membrane  
Pathways : BIOCARTA
Pathways : KEGG
Other databases
Probes
Probes : ImagenesPCDH11Y Related clones (RZPD - Berlin)
Literature
PubMed16 Pubmed reference(s) in Entrez
PubGenePCDH11Y
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated03-2009Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Feb 27 10:41:48 CET 2010
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