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PCDH15 (protocadherin related 15)

Identity

Alias (NCBI)CDHR15
DFNB23
USH1F
HGNC (Hugo) PCDH15
HGNC Alias symbCDHR15
HGNC Alias namecadherin-related family member 15
HGNC Previous nameUSH1F
 DFNB23
HGNC Previous namedeafness, autosomal recessive 23
 protocadherin 15
LocusID (NCBI) 65217
Atlas_Id 71697
Location 10q21.1  [Link to chromosome band 10q21]
Location_base_pair Starts at 53821099 and ends at 54801231 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DLG5 (10q22.3) / PCDH15 (10q21.1)DOCK1 (10q26.2) / PCDH15 (10q21.1)NCOA4 (10q11.23) / PCDH15 (10q21.1)
PCDH15 (10q21.1) / DUSP13 (10q22.2)PCDH15 (10q21.1) / PCDH15 (10q21.1)USP54 (10q22.2) / PCDH15 (10q21.1)
ZNF248 (10p11.1) / PCDH15 (10q21.1)ZNF83 (19q13.41) / PCDH15 (10q21.1)ZNF83 PCDH15
DOCK1 PCDH15DLG5 PCDH15USP54 PCDH15

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PCDH15   14674
Cards
Entrez_Gene (NCBI)PCDH15    protocadherin related 15
AliasesCDHR15; DFNB23; USH1F
GeneCards (Weizmann)PCDH15
Ensembl hg19 (Hinxton)ENSG00000150275 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000150275 [Gene_View]  ENSG00000150275 [Sequence]  chr10:53821099-54801231 [Contig_View]  PCDH15 [Vega]
ICGC DataPortalENSG00000150275
TCGA cBioPortalPCDH15
AceView (NCBI)PCDH15
Genatlas (Paris)PCDH15
SOURCE (Princeton)PCDH15
Genetics Home Reference (NIH)PCDH15
Genomic and cartography
GoldenPath hg38 (UCSC)PCDH15  -     chr10:53821099-54801231 -  10q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCDH15  -     10q21.1   [Description]    (hg19-Feb_2009)
GoldenPathPCDH15 - 10q21.1 [CytoView hg19]  PCDH15 - 10q21.1 [CytoView hg38]
ImmunoBaseENSG00000150275
Genome Data Viewer NCBIPCDH15 [Mapview hg19]  
OMIM601067   602083   605514   609533   
Gene and transcription
Genbank (Entrez)AK126923 AL834134 AW005431 AY029205 AY029237
RefSeq transcript (Entrez)NM_001142763 NM_001142764 NM_001142765 NM_001142766 NM_001142767 NM_001142768 NM_001142769 NM_001142770 NM_001142771 NM_001142772 NM_001142773 NM_001354404 NM_001354411 NM_001354420 NM_001354429 NM_001354430 NM_001384140 NM_033056
Consensus coding sequences : CCDS (NCBI)PCDH15
Gene ExpressionPCDH15 [ NCBI-GEO ]   PCDH15 [ EBI - ARRAY_EXPRESS ]   PCDH15 [ SEEK ]   PCDH15 [ MEM ]
Gene Expression Viewer (FireBrowse)PCDH15 [ Firebrowse - Broad ]
GenevisibleExpression of PCDH15 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)65217
GTEX Portal (Tissue expression)PCDH15
Human Protein AtlasENSG00000150275-PCDH15 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PCDH15
Human Protein Atlas [tissue]ENSG00000150275-PCDH15 [tissue]
HPRD05698
Protein Interaction databases
BioGRIDPCDH15
STRING (EMBL)PCDH15
ZODIACPCDH15
Ontologies - Pathways
Litterature
PubMed118 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXPCDH15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:15:31 CEST 2021
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