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PCDH17 (protocadherin 17)

Identity

Alias_symbol (synonym)PCDH68
PCH68
Other alias
HGNC (Hugo) PCDH17
LocusID (NCBI) 27253
Atlas_Id 51560
Location 13q21.1  [Link to chromosome band 13q21]
Location_base_pair Starts at 57631655 and ends at 57728931 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PCDH17 (13q21.1) / PCDH17 (13q21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCDH17   14267
Cards
Entrez_Gene (NCBI)PCDH17  27253  protocadherin 17
AliasesPCDH68; PCH68
GeneCards (Weizmann)PCDH17
Ensembl hg19 (Hinxton)ENSG00000118946 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000118946 [Gene_View]  chr13:57631655-57728931 [Contig_View]  PCDH17 [Vega]
ICGC DataPortalENSG00000118946
TCGA cBioPortalPCDH17
AceView (NCBI)PCDH17
Genatlas (Paris)PCDH17
WikiGenes27253
SOURCE (Princeton)PCDH17
Genetics Home Reference (NIH)PCDH17
Genomic and cartography
GoldenPath hg38 (UCSC)PCDH17  -     chr13:57631655-57728931 +  13q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCDH17  -     13q21.1   [Description]    (hg19-Feb_2009)
EnsemblPCDH17 - 13q21.1 [CytoView hg19]  PCDH17 - 13q21.1 [CytoView hg38]
Mapping of homologs : NCBIPCDH17 [Mapview hg19]  PCDH17 [Mapview hg38]
OMIM611760   
Gene and transcription
Genbank (Entrez)AF029343 AK001134 AK289980 AK307545 BC028165
RefSeq transcript (Entrez)NM_001040429 NM_014459
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCDH17
Cluster EST : UnigeneHs.106511 [ NCBI ]
CGAP (NCI)Hs.106511
Alternative Splicing GalleryENSG00000118946
Gene ExpressionPCDH17 [ NCBI-GEO ]   PCDH17 [ EBI - ARRAY_EXPRESS ]   PCDH17 [ SEEK ]   PCDH17 [ MEM ]
Gene Expression Viewer (FireBrowse)PCDH17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27253
GTEX Portal (Tissue expression)PCDH17
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14917   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO14917  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14917
Splice isoforms : SwissVarO14917
PhosPhoSitePlusO14917
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_CS    Cadherin_N    Protocadherin-17   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_2 (PF08266)   
Domain families : Pfam (NCBI)pfam00028    pfam08266   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)PCDH17
DMDM Disease mutations27253
Blocks (Seattle)PCDH17
SuperfamilyO14917
Human Protein AtlasENSG00000118946
Peptide AtlasO14917
IPIIPI00645206   IPI00844435   
Protein Interaction databases
DIP (DOE-UCLA)O14917
IntAct (EBI)O14917
FunCoupENSG00000118946
BioGRIDPCDH17
STRING (EMBL)PCDH17
ZODIACPCDH17
Ontologies - Pathways
QuickGOO14917
Ontology : AmiGOcalcium ion binding  protein binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  cell-cell signaling  synapse assembly  adult behavior  negative regulation of synaptic transmission  presynaptic active zone assembly  regulation of synaptic vesicle clustering  
Ontology : EGO-EBIcalcium ion binding  protein binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  cell-cell signaling  synapse assembly  adult behavior  negative regulation of synaptic transmission  presynaptic active zone assembly  regulation of synaptic vesicle clustering  
NDEx NetworkPCDH17
Atlas of Cancer Signalling NetworkPCDH17
Wikipedia pathwaysPCDH17
Orthology - Evolution
OrthoDB27253
GeneTree (enSembl)ENSG00000118946
Phylogenetic Trees/Animal Genes : TreeFamPCDH17
HOVERGENO14917
HOGENOMO14917
Homologs : HomoloGenePCDH17
Homology/Alignments : Family Browser (UCSC)PCDH17
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCDH17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCDH17
dbVarPCDH17
ClinVarPCDH17
1000_GenomesPCDH17 
Exome Variant ServerPCDH17
ExAC (Exome Aggregation Consortium)PCDH17 (select the gene name)
Genetic variants : HAPMAP27253
Genomic Variants (DGV)PCDH17 [DGVbeta]
DECIPHERPCDH17 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPCDH17 
Mutations
ICGC Data PortalPCDH17 
TCGA Data PortalPCDH17 
Broad Tumor PortalPCDH17
OASIS PortalPCDH17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCDH17  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCDH17
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCDH17
DgiDB (Drug Gene Interaction Database)PCDH17
DoCM (Curated mutations)PCDH17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCDH17 (select a term)
intoGenPCDH17
Cancer3DPCDH17(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611760   
Orphanet
MedgenPCDH17
Genetic Testing Registry PCDH17
NextProtO14917 [Medical]
TSGene27253
GENETestsPCDH17
Target ValidationPCDH17
Huge Navigator PCDH17 [HugePedia]
snp3D : Map Gene to Disease27253
BioCentury BCIQPCDH17
ClinGenPCDH17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27253
Chemical/Pharm GKB GenePA33001
Clinical trialPCDH17
Miscellaneous
canSAR (ICR)PCDH17 (select the gene name)
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCDH17
EVEXPCDH17
GoPubMedPCDH17
iHOPPCDH17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:10:11 CEST 2017

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