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PCDH18 (protocadherin 18)

Identity

Alias_symbol (synonym)KIAA1562
PCDH68L
Other alias
HGNC (Hugo) PCDH18
LocusID (NCBI) 54510
Atlas_Id 71698
Location 4q28.3  [Link to chromosome band 4q28]
Location_base_pair Starts at 137518920 and ends at 137532498 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCDH18   14268
Cards
Entrez_Gene (NCBI)PCDH18  54510  protocadherin 18
AliasesPCDH68L
GeneCards (Weizmann)PCDH18
Ensembl hg19 (Hinxton)ENSG00000189184 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000189184 [Gene_View]  chr4:137518920-137532498 [Contig_View]  PCDH18 [Vega]
ICGC DataPortalENSG00000189184
TCGA cBioPortalPCDH18
AceView (NCBI)PCDH18
Genatlas (Paris)PCDH18
WikiGenes54510
SOURCE (Princeton)PCDH18
Genetics Home Reference (NIH)PCDH18
Genomic and cartography
GoldenPath hg38 (UCSC)PCDH18  -     chr4:137518920-137532498 -  4q28.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCDH18  -     4q28.3   [Description]    (hg19-Feb_2009)
EnsemblPCDH18 - 4q28.3 [CytoView hg19]  PCDH18 - 4q28.3 [CytoView hg38]
Mapping of homologs : NCBIPCDH18 [Mapview hg19]  PCDH18 [Mapview hg38]
OMIM608287   
Gene and transcription
Genbank (Entrez)AB046782 AK292018 AK297122 AK298607 AL137471
RefSeq transcript (Entrez)NM_001300828 NM_019035
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCDH18
Cluster EST : UnigeneHs.738416 [ NCBI ]
CGAP (NCI)Hs.738416
Alternative Splicing GalleryENSG00000189184
Gene ExpressionPCDH18 [ NCBI-GEO ]   PCDH18 [ EBI - ARRAY_EXPRESS ]   PCDH18 [ SEEK ]   PCDH18 [ MEM ]
Gene Expression Viewer (FireBrowse)PCDH18 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54510
GTEX Portal (Tissue expression)PCDH18
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HCL0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HCL0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HCL0
Splice isoforms : SwissVarQ9HCL0
PhosPhoSitePlusQ9HCL0
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_CS    Cadherin_N    Protocadherin-18   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_2 (PF08266)   
Domain families : Pfam (NCBI)pfam00028    pfam08266   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)PCDH18
DMDM Disease mutations54510
Blocks (Seattle)PCDH18
SuperfamilyQ9HCL0
Human Protein AtlasENSG00000189184
Peptide AtlasQ9HCL0
HPRD12205
IPIIPI00030618   IPI00914534   IPI00552757   IPI00965452   IPI00966974   IPI00966897   
Protein Interaction databases
DIP (DOE-UCLA)Q9HCL0
IntAct (EBI)Q9HCL0
FunCoupENSG00000189184
BioGRIDPCDH18
STRING (EMBL)PCDH18
ZODIACPCDH18
Ontologies - Pathways
QuickGOQ9HCL0
Ontology : AmiGOcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  cell-cell signaling  nervous system development  brain development  
Ontology : EGO-EBIcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  cell-cell signaling  nervous system development  brain development  
NDEx NetworkPCDH18
Atlas of Cancer Signalling NetworkPCDH18
Wikipedia pathwaysPCDH18
Orthology - Evolution
OrthoDB54510
GeneTree (enSembl)ENSG00000189184
Phylogenetic Trees/Animal Genes : TreeFamPCDH18
HOVERGENQ9HCL0
HOGENOMQ9HCL0
Homologs : HomoloGenePCDH18
Homology/Alignments : Family Browser (UCSC)PCDH18
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCDH18 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCDH18
dbVarPCDH18
ClinVarPCDH18
1000_GenomesPCDH18 
Exome Variant ServerPCDH18
ExAC (Exome Aggregation Consortium)PCDH18 (select the gene name)
Genetic variants : HAPMAP54510
Genomic Variants (DGV)PCDH18 [DGVbeta]
DECIPHERPCDH18 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPCDH18 
Mutations
ICGC Data PortalPCDH18 
TCGA Data PortalPCDH18 
Broad Tumor PortalPCDH18
OASIS PortalPCDH18 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCDH18  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCDH18
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCDH18
DgiDB (Drug Gene Interaction Database)PCDH18
DoCM (Curated mutations)PCDH18 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCDH18 (select a term)
intoGenPCDH18
Cancer3DPCDH18(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608287   
Orphanet
MedgenPCDH18
Genetic Testing Registry PCDH18
NextProtQ9HCL0 [Medical]
TSGene54510
GENETestsPCDH18
Target ValidationPCDH18
Huge Navigator PCDH18 [HugePedia]
snp3D : Map Gene to Disease54510
BioCentury BCIQPCDH18
ClinGenPCDH18
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54510
Chemical/Pharm GKB GenePA33002
Clinical trialPCDH18
Miscellaneous
canSAR (ICR)PCDH18 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCDH18
EVEXPCDH18
GoPubMedPCDH18
iHOPPCDH18
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:35:38 CEST 2017

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