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PCDH20 (protocadherin 20)

Identity

Alias_symbol (synonym)PCDH13
FLJ22218
Other alias
HGNC (Hugo) PCDH20
LocusID (NCBI) 64881
Atlas_Id 55457
Location 13q21.2  [Link to chromosome band 13q21]
Location_base_pair Starts at 61983819 and ends at 61989655 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCDH20   14257
Cards
Entrez_Gene (NCBI)PCDH20  64881  protocadherin 20
AliasesPCDH13
GeneCards (Weizmann)PCDH20
Ensembl hg19 (Hinxton)ENSG00000197991 [Gene_View]  chr13:61983819-61989655 [Contig_View]  PCDH20 [Vega]
Ensembl hg38 (Hinxton)ENSG00000197991 [Gene_View]  chr13:61983819-61989655 [Contig_View]  PCDH20 [Vega]
ICGC DataPortalENSG00000197991
TCGA cBioPortalPCDH20
AceView (NCBI)PCDH20
Genatlas (Paris)PCDH20
WikiGenes64881
SOURCE (Princeton)PCDH20
Genetics Home Reference (NIH)PCDH20
Genomic and cartography
GoldenPath hg19 (UCSC)PCDH20  -     chr13:61983819-61989655 -  13q21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PCDH20  -     13q21.2   [Description]    (hg38-Dec_2013)
EnsemblPCDH20 - 13q21.2 [CytoView hg19]  PCDH20 - 13q21.2 [CytoView hg38]
Mapping of homologs : NCBIPCDH20 [Mapview hg19]  PCDH20 [Mapview hg38]
OMIM614449   
Gene and transcription
Genbank (Entrez)AA040057 AF169693 AK025871 AK094680 AK289924
RefSeq transcript (Entrez)NM_022843
RefSeq genomic (Entrez)NC_000013 NC_018924 NT_024524 NW_004929388
Consensus coding sequences : CCDS (NCBI)PCDH20
Cluster EST : UnigeneHs.391781 [ NCBI ]
CGAP (NCI)Hs.391781
Alternative Splicing GalleryENSG00000197991
Gene ExpressionPCDH20 [ NCBI-GEO ]   PCDH20 [ EBI - ARRAY_EXPRESS ]   PCDH20 [ SEEK ]   PCDH20 [ MEM ]
Gene Expression Viewer (FireBrowse)PCDH20 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64881
GTEX Portal (Tissue expression)PCDH20
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N6Y1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N6Y1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N6Y1
Splice isoforms : SwissVarQ8N6Y1
PhosPhoSitePlusQ8N6Y1
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_CS   
Domain families : Pfam (Sanger)Cadherin (PF00028)   
Domain families : Pfam (NCBI)pfam00028   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)PCDH20
DMDM Disease mutations64881
Blocks (Seattle)PCDH20
SuperfamilyQ8N6Y1
Human Protein AtlasENSG00000197991
Peptide AtlasQ8N6Y1
IPIIPI00936629   IPI00478667   
Protein Interaction databases
DIP (DOE-UCLA)Q8N6Y1
IntAct (EBI)Q8N6Y1
FunCoupENSG00000197991
BioGRIDPCDH20
STRING (EMBL)PCDH20
ZODIACPCDH20
Ontologies - Pathways
QuickGOQ8N6Y1
Ontology : AmiGOcalcium ion binding  plasma membrane  homophilic cell adhesion via plasma membrane adhesion molecules  integral component of membrane  poly(A) RNA binding  
Ontology : EGO-EBIcalcium ion binding  plasma membrane  homophilic cell adhesion via plasma membrane adhesion molecules  integral component of membrane  poly(A) RNA binding  
NDEx NetworkPCDH20
Atlas of Cancer Signalling NetworkPCDH20
Wikipedia pathwaysPCDH20
Orthology - Evolution
OrthoDB64881
GeneTree (enSembl)ENSG00000197991
Phylogenetic Trees/Animal Genes : TreeFamPCDH20
HOVERGENQ8N6Y1
HOGENOMQ8N6Y1
Homologs : HomoloGenePCDH20
Homology/Alignments : Family Browser (UCSC)PCDH20
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCDH20 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCDH20
dbVarPCDH20
ClinVarPCDH20
1000_GenomesPCDH20 
Exome Variant ServerPCDH20
ExAC (Exome Aggregation Consortium)PCDH20 (select the gene name)
Genetic variants : HAPMAP64881
Genomic Variants (DGV)PCDH20 [DGVbeta]
DECIPHER (Syndromes)13:61983819-61989655  ENSG00000197991
CONAN: Copy Number AnalysisPCDH20 
Mutations
ICGC Data PortalPCDH20 
TCGA Data PortalPCDH20 
Broad Tumor PortalPCDH20
OASIS PortalPCDH20 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCDH20  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCDH20
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCDH20
DgiDB (Drug Gene Interaction Database)PCDH20
DoCM (Curated mutations)PCDH20 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCDH20 (select a term)
intoGenPCDH20
Cancer3DPCDH20(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614449   
Orphanet
MedgenPCDH20
Genetic Testing Registry PCDH20
NextProtQ8N6Y1 [Medical]
TSGene64881
GENETestsPCDH20
Huge Navigator PCDH20 [HugePedia]
snp3D : Map Gene to Disease64881
BioCentury BCIQPCDH20
ClinGenPCDH20
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64881
Chemical/Pharm GKB GenePA33004
Clinical trialPCDH20
Miscellaneous
canSAR (ICR)PCDH20 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCDH20
EVEXPCDH20
GoPubMedPCDH20
iHOPPCDH20
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:13:42 CEST 2017

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