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PCDH7 (protocadherin 7)

Identity

Alias (NCBI)BH-Pcdh
BHPCDH
PPP1R120
HGNC (Hugo) PCDH7
HGNC Alias symbBH-Pcdh
PPP1R120
HGNC Alias nameprotein phosphatase 1, regulatory subunit 120
HGNC Previous nameBH-protocadherin (brain-heart)
LocusID (NCBI) 5099
Atlas_Id 41664
Location 4p15.1  [Link to chromosome band 4p15]
Location_base_pair Starts at 30720369 and ends at 31146800 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MTAP (9p21.3) / PCDH7 (4p15.1)PCDH7 (4p15.1) / AC021860.1 ()PCDH7 (4p15.1) / MIB1 (18q11.2)
PCDH7 (4p15.1) / PCDH7 (4p15.1)PCDH7 (4p15.1) / RAP1A (1p13.2)PCDH7 (4p15.1) / RAPGEF5 (7p15.3)
PCDH7 (4p15.1) / SNORD113-5 (14q32.31)PCDH7 (4p15.1) / ZSWIM6 (5q12.1)PCDH7 4p15.1 AC021860.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)PCDH7   8659
Cards
Entrez_Gene (NCBI)PCDH7    protocadherin 7
AliasesBH-Pcdh; BHPCDH; PPP1R120
GeneCards (Weizmann)PCDH7
Ensembl hg19 (Hinxton)ENSG00000169851 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169851 [Gene_View]  ENSG00000169851 [Sequence]  chr4:30720369-31146800 [Contig_View]  PCDH7 [Vega]
ICGC DataPortalENSG00000169851
TCGA cBioPortalPCDH7
AceView (NCBI)PCDH7
Genatlas (Paris)PCDH7
SOURCE (Princeton)PCDH7
Genetics Home Reference (NIH)PCDH7
Genomic and cartography
GoldenPath hg38 (UCSC)PCDH7  -     chr4:30720369-31146800 +  4p15.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCDH7  -     4p15.1   [Description]    (hg19-Feb_2009)
GoldenPathPCDH7 - 4p15.1 [CytoView hg19]  PCDH7 - 4p15.1 [CytoView hg38]
ImmunoBaseENSG00000169851
Genome Data Viewer NCBIPCDH7 [Mapview hg19]  
OMIM602988   
Gene and transcription
Genbank (Entrez)AB006755 AB006756 AB006757 AI041228 BC020338
RefSeq transcript (Entrez)NM_001173523 NM_002589 NM_032456 NM_032457
Consensus coding sequences : CCDS (NCBI)PCDH7
Gene ExpressionPCDH7 [ NCBI-GEO ]   PCDH7 [ EBI - ARRAY_EXPRESS ]   PCDH7 [ SEEK ]   PCDH7 [ MEM ]
Gene Expression Viewer (FireBrowse)PCDH7 [ Firebrowse - Broad ]
GenevisibleExpression of PCDH7 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5099
GTEX Portal (Tissue expression)PCDH7
Human Protein AtlasENSG00000169851-PCDH7 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60245   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60245  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60245
PhosPhoSitePlusO60245
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin-like_dom    Cadherin-like_sf    Cadherin_CS    Cadherin_N    Protocadherin   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_2 (PF08266)    Protocadherin (PF08374)   
Domain families : Pfam (NCBI)pfam00028    pfam08266    pfam08374   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)PCDH7
PDB (RSDB)2YST   
PDB Europe2YST   
PDB (PDBSum)2YST   
PDB (IMB)2YST   
Structural Biology KnowledgeBase2YST   
SCOP (Structural Classification of Proteins)2YST   
CATH (Classification of proteins structures)2YST   
SuperfamilyO60245
AlphaFold pdb e-kbO60245   
Human Protein Atlas [tissue]ENSG00000169851-PCDH7 [tissue]
HPRD04288
Protein Interaction databases
DIP (DOE-UCLA)O60245
IntAct (EBI)O60245
BioGRIDPCDH7
STRING (EMBL)PCDH7
ZODIACPCDH7
Ontologies - Pathways
QuickGOO60245
Ontology : AmiGOplatelet degranulation  calcium ion binding  plasma membrane  plasma membrane  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  platelet alpha granule membrane  
Ontology : EGO-EBIplatelet degranulation  calcium ion binding  plasma membrane  plasma membrane  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  platelet alpha granule membrane  
NDEx NetworkPCDH7
Atlas of Cancer Signalling NetworkPCDH7
Wikipedia pathwaysPCDH7
Orthology - Evolution
OrthoDB5099
GeneTree (enSembl)ENSG00000169851
Phylogenetic Trees/Animal Genes : TreeFamPCDH7
Homologs : HomoloGenePCDH7
Homology/Alignments : Family Browser (UCSC)PCDH7
Gene fusions - Rearrangements
Fusion : MitelmanMTAP/PCDH7 [9p21.3/4p15.1]  
Fusion : QuiverPCDH7
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCDH7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCDH7
dbVarPCDH7
ClinVarPCDH7
MonarchPCDH7
1000_GenomesPCDH7 
Exome Variant ServerPCDH7
GNOMAD BrowserENSG00000169851
Varsome BrowserPCDH7
ACMGPCDH7 variants
VarityO60245
Genomic Variants (DGV)PCDH7 [DGVbeta]
DECIPHERPCDH7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPCDH7 
Mutations
ICGC Data PortalPCDH7 
TCGA Data PortalPCDH7 
Broad Tumor PortalPCDH7
OASIS PortalPCDH7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCDH7  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DPCDH7
Mutations and Diseases : HGMDPCDH7
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaPCDH7
DgiDB (Drug Gene Interaction Database)PCDH7
DoCM (Curated mutations)PCDH7
CIViC (Clinical Interpretations of Variants in Cancer)PCDH7
Cancer3DPCDH7
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602988   
Orphanet
DisGeNETPCDH7
MedgenPCDH7
Genetic Testing Registry PCDH7
NextProtO60245 [Medical]
GENETestsPCDH7
Target ValidationPCDH7
Huge Navigator PCDH7 [HugePedia]
ClinGenPCDH7
Clinical trials, drugs, therapy
MyCancerGenomePCDH7
Protein Interactions : CTDPCDH7
Pharm GKB GenePA33006
PharosO60245
Clinical trialPCDH7
Miscellaneous
canSAR (ICR)PCDH7
HarmonizomePCDH7
DataMed IndexPCDH7
Probes
Litterature
PubMed40 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXPCDH7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:24:32 CEST 2021

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