Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PCDH7 (protocadherin 7)

Identity

Alias_namesregulatory subunit 120
Alias_symbol (synonym)BH-Pcdh
PPP1R120
Other aliasBHPCDH
HGNC (Hugo) PCDH7
LocusID (NCBI) 5099
Atlas_Id 41664
Location 4p15.1  [Link to chromosome band 4p15]
Location_base_pair Starts at 30722037 and ends at 31148423 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
MTAP (9p21.3) / PCDH7 (4p15.1)PCDH7 (4p15.1) / AC021860.1 ()PCDH7 (4p15.1) / MIB1 (18q11.2)
PCDH7 (4p15.1) / PCDH7 (4p15.1)PCDH7 (4p15.1) / RAP1A (1p13.2)PCDH7 (4p15.1) / RAPGEF5 (7p15.3)
PCDH7 (4p15.1) / SNORD113-5 (14q32.31)PCDH7 (4p15.1) / ZSWIM6 (5q12.1)PCDH7 4p15.1 AC021860.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCDH7   8659
Cards
Entrez_Gene (NCBI)PCDH7  5099  protocadherin 7
AliasesBH-Pcdh; BHPCDH; PPP1R120
GeneCards (Weizmann)PCDH7
Ensembl hg19 (Hinxton)ENSG00000169851 [Gene_View]  chr4:30722037-31148423 [Contig_View]  PCDH7 [Vega]
Ensembl hg38 (Hinxton)ENSG00000169851 [Gene_View]  chr4:30722037-31148423 [Contig_View]  PCDH7 [Vega]
ICGC DataPortalENSG00000169851
TCGA cBioPortalPCDH7
AceView (NCBI)PCDH7
Genatlas (Paris)PCDH7
WikiGenes5099
SOURCE (Princeton)PCDH7
Genetics Home Reference (NIH)PCDH7
Genomic and cartography
GoldenPath hg19 (UCSC)PCDH7  -     chr4:30722037-31148423 +  4p15.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PCDH7  -     4p15.1   [Description]    (hg38-Dec_2013)
EnsemblPCDH7 - 4p15.1 [CytoView hg19]  PCDH7 - 4p15.1 [CytoView hg38]
Mapping of homologs : NCBIPCDH7 [Mapview hg19]  PCDH7 [Mapview hg38]
OMIM602988   
Gene and transcription
Genbank (Entrez)AB006755 AB006756 AB006757 AI041228 BC020338
RefSeq transcript (Entrez)NM_001173523 NM_002589 NM_032456 NM_032457
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_006316 NW_004929315
Consensus coding sequences : CCDS (NCBI)PCDH7
Cluster EST : UnigeneHs.479439 [ NCBI ]
CGAP (NCI)Hs.479439
Alternative Splicing GalleryENSG00000169851
Gene ExpressionPCDH7 [ NCBI-GEO ]   PCDH7 [ EBI - ARRAY_EXPRESS ]   PCDH7 [ SEEK ]   PCDH7 [ MEM ]
Gene Expression Viewer (FireBrowse)PCDH7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5099
GTEX Portal (Tissue expression)PCDH7
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60245   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60245  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60245
Splice isoforms : SwissVarO60245
PhosPhoSitePlusO60245
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_CS    Protocadherin   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Protocadherin (PF08374)   
Domain families : Pfam (NCBI)pfam00028    pfam08374   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)PCDH7
DMDM Disease mutations5099
Blocks (Seattle)PCDH7
PDB (SRS)2YST   
PDB (PDBSum)2YST   
PDB (IMB)2YST   
PDB (RSDB)2YST   
Structural Biology KnowledgeBase2YST   
SCOP (Structural Classification of Proteins)2YST   
CATH (Classification of proteins structures)2YST   
SuperfamilyO60245
Human Protein AtlasENSG00000169851
Peptide AtlasO60245
HPRD04288
IPIIPI00001893   IPI00215946   IPI00289870   IPI00956433   IPI00983706   
Protein Interaction databases
DIP (DOE-UCLA)O60245
IntAct (EBI)O60245
FunCoupENSG00000169851
BioGRIDPCDH7
STRING (EMBL)PCDH7
ZODIACPCDH7
Ontologies - Pathways
QuickGOO60245
Ontology : AmiGOplatelet degranulation  calcium ion binding  plasma membrane  plasma membrane  integral component of plasma membrane  homophilic cell adhesion via plasma membrane adhesion molecules  platelet alpha granule membrane  
Ontology : EGO-EBIplatelet degranulation  calcium ion binding  plasma membrane  plasma membrane  integral component of plasma membrane  homophilic cell adhesion via plasma membrane adhesion molecules  platelet alpha granule membrane  
NDEx NetworkPCDH7
Atlas of Cancer Signalling NetworkPCDH7
Wikipedia pathwaysPCDH7
Orthology - Evolution
OrthoDB5099
GeneTree (enSembl)ENSG00000169851
Phylogenetic Trees/Animal Genes : TreeFamPCDH7
HOVERGENO60245
HOGENOMO60245
Homologs : HomoloGenePCDH7
Homology/Alignments : Family Browser (UCSC)PCDH7
Gene fusions - Rearrangements
Fusion : MitelmanMTAP/PCDH7 [9p21.3/4p15.1]  [t(4;9)(p15;p21)]  
Fusion: TCGAPCDH7 4p15.1 AC021860.1 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCDH7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCDH7
dbVarPCDH7
ClinVarPCDH7
1000_GenomesPCDH7 
Exome Variant ServerPCDH7
ExAC (Exome Aggregation Consortium)PCDH7 (select the gene name)
Genetic variants : HAPMAP5099
Genomic Variants (DGV)PCDH7 [DGVbeta]
DECIPHER (Syndromes)4:30722037-31148423  ENSG00000169851
CONAN: Copy Number AnalysisPCDH7 
Mutations
ICGC Data PortalPCDH7 
TCGA Data PortalPCDH7 
Broad Tumor PortalPCDH7
OASIS PortalPCDH7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCDH7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCDH7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCDH7
DgiDB (Drug Gene Interaction Database)PCDH7
DoCM (Curated mutations)PCDH7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCDH7 (select a term)
intoGenPCDH7
Cancer3DPCDH7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602988   
Orphanet
MedgenPCDH7
Genetic Testing Registry PCDH7
NextProtO60245 [Medical]
TSGene5099
GENETestsPCDH7
Huge Navigator PCDH7 [HugePedia]
snp3D : Map Gene to Disease5099
BioCentury BCIQPCDH7
ClinGenPCDH7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD5099
Chemical/Pharm GKB GenePA33006
Clinical trialPCDH7
Miscellaneous
canSAR (ICR)PCDH7 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCDH7
EVEXPCDH7
GoPubMedPCDH7
iHOPPCDH7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:20:36 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.