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PCDH8 (protocadherin 8)

Identity

Other namesARCADLIN
PAPC
HGNC (Hugo) PCDH8
LocusID (NCBI) 5100
Location 13q14.3
Location_base_pair Starts at 53418109 and ends at 53422775 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)PCDH8   8660
Cards
Entrez_Gene (NCBI)PCDH8  5100  protocadherin 8
GeneCards (Weizmann)PCDH8
Ensembl (Hinxton)ENSG00000136099 [Gene_View]  chr13:53418109-53422775 [Contig_View]  PCDH8 [Vega]
ICGC DataPortalENSG00000136099
cBioPortalPCDH8
AceView (NCBI)PCDH8
Genatlas (Paris)PCDH8
WikiGenes5100
SOURCE (Princeton)NM_002590 NM_032949
Genomic and cartography
GoldenPath (UCSC)PCDH8  -  13q14.3   chr13:53418109-53422775 -  13q14.3   [Description]    (hg19-Feb_2009)
EnsemblPCDH8 - 13q14.3 [CytoView]
Mapping of homologs : NCBIPCDH8 [Mapview]
OMIM603580   
Gene and transcription
Genbank (Entrez)AF061573 AK293747 AK297652 AY013873 BC036025
RefSeq transcript (Entrez)NM_002590 NM_032949
RefSeq genomic (Entrez)AC_000145 NC_000013 NC_018924 NT_024524 NW_001838080 NW_004929388
Consensus coding sequences : CCDS (NCBI)PCDH8
Cluster EST : UnigeneHs.19492 [ NCBI ]
CGAP (NCI)Hs.19492
Alternative Splicing : Fast-db (Paris)GSHG0008514
Alternative Splicing GalleryENSG00000136099
Gene ExpressionPCDH8 [ NCBI-GEO ]     PCDH8 [ SEEK ]   PCDH8 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95206 (Uniprot)
NextProtO95206  [Medical]
With graphics : InterProO95206
Splice isoforms : SwissVarO95206 (Swissvar)
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin [organisation]   Cadherin-like [organisation]   Cadherin_CS [organisation]   Cadherin_N [organisation]  
Related proteins : CluSTrO95206
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_2 (PF08266)   
Domain families : Pfam (NCBI)pfam00028    pfam08266   
Domain families : Smart (EMBL)CA (SM00112)  
DMDM Disease mutations5100
Blocks (Seattle)O95206
Human Protein AtlasENSG00000136099 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasO95206
HPRD04660
IPIIPI00001895   IPI00374110   IPI00910395   IPI00909241   
Protein Interaction databases
DIP (DOE-UCLA)O95206
IntAct (EBI)O95206
FunCoupENSG00000136099
BioGRIDPCDH8
InParanoidO95206
Interologous Interaction database O95206
IntegromeDBPCDH8
STRING (EMBL)PCDH8
Ontologies - Pathways
Ontology : AmiGOsomitogenesis  calcium ion binding  plasma membrane  integral to plasma membrane  homophilic cell adhesion  cell-cell signaling  synaptic transmission  morphogenesis of embryonic epithelium  cell junction  dendrite  presynaptic membrane  postsynaptic membrane  
Ontology : EGO-EBIsomitogenesis  calcium ion binding  plasma membrane  integral to plasma membrane  homophilic cell adhesion  cell-cell signaling  synaptic transmission  morphogenesis of embryonic epithelium  cell junction  dendrite  presynaptic membrane  postsynaptic membrane  
Protein Interaction DatabasePCDH8
Wikipedia pathwaysPCDH8
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)PCDH8
snp3D : Map Gene to Disease5100
SNP (GeneSNP Utah)PCDH8
SNP : HGBasePCDH8
Genetic variants : HAPMAPPCDH8
Exome VariantPCDH8
1000_GenomesPCDH8 
ICGC programENSG00000136099 
Somatic Mutations in Cancer : COSMICPCDH8 
CONAN: Copy Number AnalysisPCDH8 
Mutations and Diseases : HGMDPCDH8
Genomic VariantsPCDH8  PCDH8 [DGVbeta]
dbVarPCDH8
ClinVarPCDH8
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM603580   
MedgenPCDH8
GENETestsPCDH8
Disease Genetic AssociationPCDH8
Huge Navigator PCDH8 [HugePedia]  PCDH8 [HugeCancerGEM]
General knowledge
Homologs : HomoloGenePCDH8
Homology/Alignments : Family Browser (UCSC)PCDH8
Phylogenetic Trees/Animal Genes : TreeFamPCDH8
Chemical/Protein Interactions : CTD5100
Chemical/Pharm GKB GenePA33007
Clinical trialPCDH8
Cancer Resource (Charite)ENSG00000136099
Other databases
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
CoreMinePCDH8
iHOPPCDH8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jul 11 17:10:56 CEST 2014

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