Atlas of Genetics and Cytogenetics in Oncology and Haematology


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PCDH9-AS4 (PCDH9 antisense RNA 4)

Identity

Alias_namesPCDH9 antisense RNA 4 (non-protein coding)
Other alias-
HGNC (Hugo) PCDH9-AS4
LocusID (NCBI) 100874087
Atlas_Id 71703
Location 13q21.32  [Link to chromosome band 13q21]
Location_base_pair Starts at 67565018 and ends at 67576132 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCDH9-AS4   40428
Cards
Entrez_Gene (NCBI)PCDH9-AS4  100874087  PCDH9 antisense RNA 4
Aliases
GeneCards (Weizmann)PCDH9-AS4
Ensembl hg19 (Hinxton)ENSG00000233840 [Gene_View]  chr13:67565018-67576132 [Contig_View]  PCDH9-AS4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000233840 [Gene_View]  chr13:67565018-67576132 [Contig_View]  PCDH9-AS4 [Vega]
ICGC DataPortalENSG00000233840
TCGA cBioPortalPCDH9-AS4
AceView (NCBI)PCDH9-AS4
Genatlas (Paris)PCDH9-AS4
WikiGenes100874087
SOURCE (Princeton)PCDH9-AS4
Genetics Home Reference (NIH)PCDH9-AS4
Genomic and cartography
GoldenPath hg19 (UCSC)PCDH9-AS4  -     chr13:67565018-67576132 +  13q21.32   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PCDH9-AS4  -     13q21.32   [Description]    (hg38-Dec_2013)
EnsemblPCDH9-AS4 - 13q21.32 [CytoView hg19]  PCDH9-AS4 - 13q21.32 [CytoView hg38]
Mapping of homologs : NCBIPCDH9-AS4 [Mapview hg19]  PCDH9-AS4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI809643 HG505714
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000013 NC_018924 NG_011876 NT_024524 NW_004929388
Consensus coding sequences : CCDS (NCBI)PCDH9-AS4
Cluster EST : UnigeneHs.606903 [ NCBI ]
CGAP (NCI)Hs.606903
Alternative Splicing GalleryENSG00000233840
Gene ExpressionPCDH9-AS4 [ NCBI-GEO ]   PCDH9-AS4 [ EBI - ARRAY_EXPRESS ]   PCDH9-AS4 [ SEEK ]   PCDH9-AS4 [ MEM ]
Gene Expression Viewer (FireBrowse)PCDH9-AS4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100874087
GTEX Portal (Tissue expression)PCDH9-AS4
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)PCDH9-AS4
DMDM Disease mutations100874087
Blocks (Seattle)PCDH9-AS4
Human Protein AtlasENSG00000233840
Protein Interaction databases
FunCoupENSG00000233840
BioGRIDPCDH9-AS4
STRING (EMBL)PCDH9-AS4
ZODIACPCDH9-AS4
Ontologies - Pathways
Huge Navigator PCDH9-AS4 [HugePedia]
snp3D : Map Gene to Disease100874087
BioCentury BCIQPCDH9-AS4
ClinGenPCDH9-AS4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100874087
Clinical trialPCDH9-AS4
Miscellaneous
canSAR (ICR)PCDH9-AS4 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCDH9-AS4
EVEXPCDH9-AS4
GoPubMedPCDH9-AS4
iHOPPCDH9-AS4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:37:55 CET 2017

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