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PCDH9 (protocadherin 9)

Identity

Alias (NCBI)-
HGNC (Hugo) PCDH9
LocusID (NCBI) 5101
Atlas_Id 52752
Location 13q21.32  [Link to chromosome band 13q21]
Location_base_pair Starts at 66302834 and ends at 67230336 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DGKG (3q27.2) / PCDH9 (13q21.32)KIAA1033 (12q23.3) / PCDH9 (13q21.32)PCDH9 (13q21.32) / CCDC91 (12p11.22)
PCDH9 (13q21.32) / CNOT2 (12q15)PCDH9 (13q21.32) / PCDH9 (13q21.32)RNF121 (11q13.4) / PCDH9 (13q21.32)
KIAA1033 12q23.3 / PCDH9 13q21.32RNF121 11q13.4 / PCDH9 13q21.32

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)PCDH9   8661
Cards
Entrez_Gene (NCBI)PCDH9    protocadherin 9
Aliases
GeneCards (Weizmann)PCDH9
Ensembl hg19 (Hinxton)ENSG00000184226 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184226 [Gene_View]  ENSG00000184226 [Sequence]  chr13:66302834-67230336 [Contig_View]  PCDH9 [Vega]
ICGC DataPortalENSG00000184226
TCGA cBioPortalPCDH9
AceView (NCBI)PCDH9
Genatlas (Paris)PCDH9
SOURCE (Princeton)PCDH9
Genetics Home Reference (NIH)PCDH9
Genomic and cartography
GoldenPath hg38 (UCSC)PCDH9  -     chr13:66302834-67230336 -  13q21.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCDH9  -     13q21.32   [Description]    (hg19-Feb_2009)
GoldenPathPCDH9 - 13q21.32 [CytoView hg19]  PCDH9 - 13q21.32 [CytoView hg38]
ImmunoBaseENSG00000184226
genome Data Viewer NCBIPCDH9 [Mapview hg19]  
OMIM603581   
Gene and transcription
Genbank (Entrez)AB114416 AF169692 AI300218 AK054661 AK057768
RefSeq transcript (Entrez)NM_001318372 NM_001318373 NM_001318374 NM_020403 NM_203487
Consensus coding sequences : CCDS (NCBI)PCDH9
Alternative Splicing GalleryENSG00000184226
Gene ExpressionPCDH9 [ NCBI-GEO ]   PCDH9 [ EBI - ARRAY_EXPRESS ]   PCDH9 [ SEEK ]   PCDH9 [ MEM ]
Gene Expression Viewer (FireBrowse)PCDH9 [ Firebrowse - Broad ]
GenevisibleExpression of PCDH9 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)5101
GTEX Portal (Tissue expression)PCDH9
Human Protein AtlasENSG00000184226-PCDH9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HC56   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HC56  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HC56
PhosPhoSitePlusQ9HC56
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin-like_dom    Cadherin-like_sf    Cadherin_CS    Cadherin_N    Protocadherin   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_2 (PF08266)    Protocadherin (PF08374)   
Domain families : Pfam (NCBI)pfam00028    pfam08266    pfam08374   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)PCDH9
PDB (RSDB)2EE0   
PDB Europe2EE0   
PDB (PDBSum)2EE0   
PDB (IMB)2EE0   
Structural Biology KnowledgeBase2EE0   
SCOP (Structural Classification of Proteins)2EE0   
CATH (Classification of proteins structures)2EE0   
SuperfamilyQ9HC56
AlphaFold pdb e-kbQ9HC56   
Human Protein Atlas [tissue]ENSG00000184226-PCDH9 [tissue]
HPRD04661
Protein Interaction databases
DIP (DOE-UCLA)Q9HC56
IntAct (EBI)Q9HC56
BioGRIDPCDH9
STRING (EMBL)PCDH9
ZODIACPCDH9
Ontologies - Pathways
QuickGOQ9HC56
Ontology : AmiGOcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  growth cone  forebrain development  cell-cell contact zone  
Ontology : EGO-EBIcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  growth cone  forebrain development  cell-cell contact zone  
NDEx NetworkPCDH9
Atlas of Cancer Signalling NetworkPCDH9
Wikipedia pathwaysPCDH9
Orthology - Evolution
OrthoDB5101
GeneTree (enSembl)ENSG00000184226
Phylogenetic Trees/Animal Genes : TreeFamPCDH9
Homologs : HomoloGenePCDH9
Homology/Alignments : Family Browser (UCSC)PCDH9
Gene fusions - Rearrangements
Fusion : MitelmanKIAA1033/PCDH9 [12q23.3/13q21.32]  
Fusion : MitelmanRNF121/PCDH9 [11q13.4/13q21.32]  
Fusion PortalKIAA1033 12q23.3 PCDH9 13q21.32 LUSC
Fusion PortalRNF121 11q13.4 PCDH9 13q21.32 LUSC
Fusion : QuiverPCDH9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCDH9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCDH9
dbVarPCDH9
ClinVarPCDH9
MonarchPCDH9
1000_GenomesPCDH9 
Exome Variant ServerPCDH9
GNOMAD BrowserENSG00000184226
Varsome BrowserPCDH9
Genomic Variants (DGV)PCDH9 [DGVbeta]
DECIPHERPCDH9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPCDH9 
Mutations
ICGC Data PortalPCDH9 
TCGA Data PortalPCDH9 
Broad Tumor PortalPCDH9
OASIS PortalPCDH9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCDH9  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DPCDH9
Mutations and Diseases : HGMDPCDH9
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutasearch PCDH9
DgiDB (Drug Gene Interaction Database)PCDH9
DoCM (Curated mutations)PCDH9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCDH9 (select a term)
Cancer3DPCDH9(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603581   
Orphanet
DisGeNETPCDH9
MedgenPCDH9
Genetic Testing Registry PCDH9
NextProtQ9HC56 [Medical]
GENETestsPCDH9
Target ValidationPCDH9
Huge Navigator PCDH9 [HugePedia]
ClinGenPCDH9 (curated)
Clinical trials, drugs, therapy
MyCancerGenomePCDH9
Protein Interactions : CTDPCDH9
Pharm GKB GenePA33008
PharosQ9HC56
Clinical trialPCDH9
Miscellaneous
canSAR (ICR)PCDH9
HarmonizomePCDH9
DataMed IndexPCDH9
Probes
Litterature
PubMed35 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXPCDH9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Sep 15 22:29:47 CEST 2021

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