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PCDHA10 (protocadherin alpha 10)

Identity

Alias_namesCNRS8
Alias_symbol (synonym)CNR8
CRNR8
CNRN8
PCDH-ALPHA10
Other alias
HGNC (Hugo) PCDHA10
LocusID (NCBI) 56139
Atlas_Id 71705
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 140235468 and ends at 140391929 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCDHA10   8664
Cards
Entrez_Gene (NCBI)PCDHA10  56139  protocadherin alpha 10
AliasesCNR8; CNRN8; CNRS8; CRNR8; 
PCDH-ALPHA10
GeneCards (Weizmann)PCDHA10
Ensembl hg19 (Hinxton)ENSG00000250120 [Gene_View]  chr5:140235468-140391929 [Contig_View]  PCDHA10 [Vega]
Ensembl hg38 (Hinxton)ENSG00000250120 [Gene_View]  chr5:140235468-140391929 [Contig_View]  PCDHA10 [Vega]
ICGC DataPortalENSG00000250120
TCGA cBioPortalPCDHA10
AceView (NCBI)PCDHA10
Genatlas (Paris)PCDHA10
WikiGenes56139
SOURCE (Princeton)PCDHA10
Genetics Home Reference (NIH)PCDHA10
Genomic and cartography
GoldenPath hg19 (UCSC)PCDHA10  -     chr5:140235468-140391929 +  5q31.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PCDHA10  -     5q31.3   [Description]    (hg38-Dec_2013)
EnsemblPCDHA10 - 5q31.3 [CytoView hg19]  PCDHA10 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIPCDHA10 [Mapview hg19]  PCDHA10 [Mapview hg38]
OMIM606316   
Gene and transcription
Genbank (Entrez)AF152306 AF152475 AF169689 BC130447 DA503193
RefSeq transcript (Entrez)NM_018901 NM_031859 NM_031860
RefSeq genomic (Entrez)NC_000005 NC_018916 NG_000016 NT_029289 NW_004929324
Consensus coding sequences : CCDS (NCBI)PCDHA10
Cluster EST : UnigeneHs.199343 [ NCBI ]
CGAP (NCI)Hs.199343
Alternative Splicing GalleryENSG00000250120
Gene ExpressionPCDHA10 [ NCBI-GEO ]   PCDHA10 [ EBI - ARRAY_EXPRESS ]   PCDHA10 [ SEEK ]   PCDHA10 [ MEM ]
Gene Expression Viewer (FireBrowse)PCDHA10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56139
GTEX Portal (Tissue expression)PCDHA10
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5I2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5I2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5I2
Splice isoforms : SwissVarQ9Y5I2
PhosPhoSitePlusQ9Y5I2
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_CS    Cadherin_N   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_2 (PF08266)   
Domain families : Pfam (NCBI)pfam00028    pfam08266   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)PCDHA10
DMDM Disease mutations56139
Blocks (Seattle)PCDHA10
SuperfamilyQ9Y5I2
Human Protein AtlasENSG00000250120
Peptide AtlasQ9Y5I2
HPRD07328
IPIIPI00001513   IPI00218625   IPI00218626   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5I2
IntAct (EBI)Q9Y5I2
FunCoupENSG00000250120
BioGRIDPCDHA10
STRING (EMBL)PCDHA10
ZODIACPCDHA10
Ontologies - Pathways
QuickGOQ9Y5I2
Ontology : AmiGOcalcium ion binding  extracellular region  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  nervous system development  
Ontology : EGO-EBIcalcium ion binding  extracellular region  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  nervous system development  
NDEx NetworkPCDHA10
Atlas of Cancer Signalling NetworkPCDHA10
Wikipedia pathwaysPCDHA10
Orthology - Evolution
OrthoDB56139
GeneTree (enSembl)ENSG00000250120
Phylogenetic Trees/Animal Genes : TreeFamPCDHA10
HOVERGENQ9Y5I2
HOGENOMQ9Y5I2
Homologs : HomoloGenePCDHA10
Homology/Alignments : Family Browser (UCSC)PCDHA10
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCDHA10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCDHA10
dbVarPCDHA10
ClinVarPCDHA10
1000_GenomesPCDHA10 
Exome Variant ServerPCDHA10
ExAC (Exome Aggregation Consortium)PCDHA10 (select the gene name)
Genetic variants : HAPMAP56139
Genomic Variants (DGV)PCDHA10 [DGVbeta]
DECIPHER (Syndromes)5:140235468-140391929  ENSG00000250120
CONAN: Copy Number AnalysisPCDHA10 
Mutations
ICGC Data PortalPCDHA10 
TCGA Data PortalPCDHA10 
Broad Tumor PortalPCDHA10
OASIS PortalPCDHA10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCDHA10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCDHA10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCDHA10
DgiDB (Drug Gene Interaction Database)PCDHA10
DoCM (Curated mutations)PCDHA10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCDHA10 (select a term)
intoGenPCDHA10
Cancer3DPCDHA10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606316   
Orphanet
MedgenPCDHA10
Genetic Testing Registry PCDHA10
NextProtQ9Y5I2 [Medical]
TSGene56139
GENETestsPCDHA10
Huge Navigator PCDHA10 [HugePedia]
snp3D : Map Gene to Disease56139
BioCentury BCIQPCDHA10
ClinGenPCDHA10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56139
Chemical/Pharm GKB GenePA33010
Clinical trialPCDHA10
Miscellaneous
canSAR (ICR)PCDHA10 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCDHA10
EVEXPCDHA10
GoPubMedPCDHA10
iHOPPCDHA10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:37:56 CET 2017

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