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PCDHA11 (protocadherin alpha 11)

Identity

Alias_namesCNRS7
Alias_symbol (synonym)CNR7
CRNR7
CNRN7
PCDH-ALPHA11
Other alias
HGNC (Hugo) PCDHA11
LocusID (NCBI) 56138
Atlas_Id 71706
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 140867513 and ends at 141012344 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PCDHA11 (5q31.3) / ANKHD1 (5q31.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCDHA11   8665
Cards
Entrez_Gene (NCBI)PCDHA11  56138  protocadherin alpha 11
AliasesCNR7; CNRN7; CNRS7; CRNR7; 
PCDH-ALPHA11
GeneCards (Weizmann)PCDHA11
Ensembl hg19 (Hinxton)ENSG00000249158 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000249158 [Gene_View]  chr5:140867513-141012344 [Contig_View]  PCDHA11 [Vega]
ICGC DataPortalENSG00000249158
TCGA cBioPortalPCDHA11
AceView (NCBI)PCDHA11
Genatlas (Paris)PCDHA11
WikiGenes56138
SOURCE (Princeton)PCDHA11
Genetics Home Reference (NIH)PCDHA11
Genomic and cartography
GoldenPath hg38 (UCSC)PCDHA11  -     chr5:140867513-141012344 +  5q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCDHA11  -     5q31.3   [Description]    (hg19-Feb_2009)
EnsemblPCDHA11 - 5q31.3 [CytoView hg19]  PCDHA11 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIPCDHA11 [Mapview hg19]  PCDHA11 [Mapview hg38]
OMIM606317   
Gene and transcription
Genbank (Entrez)AF152307 AF152476 AJ007609 BC136706 BX111117
RefSeq transcript (Entrez)NM_018902 NM_031861
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCDHA11
Cluster EST : UnigeneHs.670031 [ NCBI ]
CGAP (NCI)Hs.670031
Alternative Splicing GalleryENSG00000249158
Gene ExpressionPCDHA11 [ NCBI-GEO ]   PCDHA11 [ EBI - ARRAY_EXPRESS ]   PCDHA11 [ SEEK ]   PCDHA11 [ MEM ]
Gene Expression Viewer (FireBrowse)PCDHA11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56138
GTEX Portal (Tissue expression)PCDHA11
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5I1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5I1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5I1
Splice isoforms : SwissVarQ9Y5I1
PhosPhoSitePlusQ9Y5I1
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_CBD    Cadherin_CS    Cadherin_N   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_2 (PF08266)    Cadherin_tail (PF15974)   
Domain families : Pfam (NCBI)pfam00028    pfam08266    pfam15974   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)PCDHA11
DMDM Disease mutations56138
Blocks (Seattle)PCDHA11
SuperfamilyQ9Y5I1
Human Protein AtlasENSG00000249158
Peptide AtlasQ9Y5I1
HPRD07329
IPIIPI00001511   IPI00010793   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5I1
IntAct (EBI)Q9Y5I1
FunCoupENSG00000249158
BioGRIDPCDHA11
STRING (EMBL)PCDHA11
ZODIACPCDHA11
Ontologies - Pathways
QuickGOQ9Y5I1
Ontology : AmiGOcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  cell-cell signaling  nervous system development  
Ontology : EGO-EBIcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  cell-cell signaling  nervous system development  
NDEx NetworkPCDHA11
Atlas of Cancer Signalling NetworkPCDHA11
Wikipedia pathwaysPCDHA11
Orthology - Evolution
OrthoDB56138
GeneTree (enSembl)ENSG00000249158
Phylogenetic Trees/Animal Genes : TreeFamPCDHA11
HOVERGENQ9Y5I1
HOGENOMQ9Y5I1
Homologs : HomoloGenePCDHA11
Homology/Alignments : Family Browser (UCSC)PCDHA11
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCDHA11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCDHA11
dbVarPCDHA11
ClinVarPCDHA11
1000_GenomesPCDHA11 
Exome Variant ServerPCDHA11
ExAC (Exome Aggregation Consortium)PCDHA11 (select the gene name)
Genetic variants : HAPMAP56138
Genomic Variants (DGV)PCDHA11 [DGVbeta]
DECIPHERPCDHA11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPCDHA11 
Mutations
ICGC Data PortalPCDHA11 
TCGA Data PortalPCDHA11 
Broad Tumor PortalPCDHA11
OASIS PortalPCDHA11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCDHA11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCDHA11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCDHA11
DgiDB (Drug Gene Interaction Database)PCDHA11
DoCM (Curated mutations)PCDHA11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCDHA11 (select a term)
intoGenPCDHA11
Cancer3DPCDHA11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606317   
Orphanet
MedgenPCDHA11
Genetic Testing Registry PCDHA11
NextProtQ9Y5I1 [Medical]
TSGene56138
GENETestsPCDHA11
Target ValidationPCDHA11
Huge Navigator PCDHA11 [HugePedia]
snp3D : Map Gene to Disease56138
BioCentury BCIQPCDHA11
ClinGenPCDHA11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56138
Chemical/Pharm GKB GenePA33011
Clinical trialPCDHA11
Miscellaneous
canSAR (ICR)PCDHA11 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCDHA11
EVEXPCDHA11
GoPubMedPCDHA11
iHOPPCDHA11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:34:02 CEST 2017

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