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PCDHA12 (protocadherin alpha 12)

Identity

Alias_symbol (synonym)PCDH-ALPHA12
Other alias
HGNC (Hugo) PCDHA12
LocusID (NCBI) 56137
Atlas_Id 71707
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 140254887 and ends at 140391929 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCDHA12   8666
Cards
Entrez_Gene (NCBI)PCDHA12  56137  protocadherin alpha 12
AliasesPCDH-ALPHA12
GeneCards (Weizmann)PCDHA12
Ensembl hg19 (Hinxton)ENSG00000251664 [Gene_View]  chr5:140254887-140391929 [Contig_View]  PCDHA12 [Vega]
Ensembl hg38 (Hinxton)ENSG00000251664 [Gene_View]  chr5:140254887-140391929 [Contig_View]  PCDHA12 [Vega]
ICGC DataPortalENSG00000251664
TCGA cBioPortalPCDHA12
AceView (NCBI)PCDHA12
Genatlas (Paris)PCDHA12
WikiGenes56137
SOURCE (Princeton)PCDHA12
Genetics Home Reference (NIH)PCDHA12
Genomic and cartography
GoldenPath hg19 (UCSC)PCDHA12  -     chr5:140254887-140391929 +  5q31.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PCDHA12  -     5q31.3   [Description]    (hg38-Dec_2013)
EnsemblPCDHA12 - 5q31.3 [CytoView hg19]  PCDHA12 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIPCDHA12 [Mapview hg19]  PCDHA12 [Mapview hg38]
OMIM606318   
Gene and transcription
Genbank (Entrez)AF152308 AF152477 AK075556 AW134813 BC112280
RefSeq transcript (Entrez)NM_018903 NM_031864
RefSeq genomic (Entrez)NC_000005 NC_018916 NG_000016 NT_029289 NW_004929324
Consensus coding sequences : CCDS (NCBI)PCDHA12
Cluster EST : UnigeneHs.608548 [ NCBI ]
CGAP (NCI)Hs.608548
Alternative Splicing GalleryENSG00000251664
Gene ExpressionPCDHA12 [ NCBI-GEO ]   PCDHA12 [ EBI - ARRAY_EXPRESS ]   PCDHA12 [ SEEK ]   PCDHA12 [ MEM ]
Gene Expression Viewer (FireBrowse)PCDHA12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56137
GTEX Portal (Tissue expression)PCDHA12
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UN75   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UN75  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UN75
Splice isoforms : SwissVarQ9UN75
PhosPhoSitePlusQ9UN75
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_CS    Cadherin_N   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_2 (PF08266)   
Domain families : Pfam (NCBI)pfam00028    pfam08266   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)PCDHA12
DMDM Disease mutations56137
Blocks (Seattle)PCDHA12
SuperfamilyQ9UN75
Human Protein AtlasENSG00000251664
Peptide AtlasQ9UN75
HPRD07330
IPIIPI00009045   IPI00333673   IPI00930348   
Protein Interaction databases
DIP (DOE-UCLA)Q9UN75
IntAct (EBI)Q9UN75
FunCoupENSG00000251664
BioGRIDPCDHA12
STRING (EMBL)PCDHA12
ZODIACPCDHA12
Ontologies - Pathways
QuickGOQ9UN75
Ontology : AmiGOcalcium ion binding  plasma membrane  homophilic cell adhesion via plasma membrane adhesion molecules  integral component of membrane  
Ontology : EGO-EBIcalcium ion binding  plasma membrane  homophilic cell adhesion via plasma membrane adhesion molecules  integral component of membrane  
NDEx NetworkPCDHA12
Atlas of Cancer Signalling NetworkPCDHA12
Wikipedia pathwaysPCDHA12
Orthology - Evolution
OrthoDB56137
GeneTree (enSembl)ENSG00000251664
Phylogenetic Trees/Animal Genes : TreeFamPCDHA12
HOVERGENQ9UN75
HOGENOMQ9UN75
Homologs : HomoloGenePCDHA12
Homology/Alignments : Family Browser (UCSC)PCDHA12
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCDHA12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCDHA12
dbVarPCDHA12
ClinVarPCDHA12
1000_GenomesPCDHA12 
Exome Variant ServerPCDHA12
ExAC (Exome Aggregation Consortium)PCDHA12 (select the gene name)
Genetic variants : HAPMAP56137
Genomic Variants (DGV)PCDHA12 [DGVbeta]
DECIPHER (Syndromes)5:140254887-140391929  ENSG00000251664
CONAN: Copy Number AnalysisPCDHA12 
Mutations
ICGC Data PortalPCDHA12 
TCGA Data PortalPCDHA12 
Broad Tumor PortalPCDHA12
OASIS PortalPCDHA12 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCDHA12  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCDHA12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCDHA12
DgiDB (Drug Gene Interaction Database)PCDHA12
DoCM (Curated mutations)PCDHA12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCDHA12 (select a term)
intoGenPCDHA12
Cancer3DPCDHA12(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606318   
Orphanet
MedgenPCDHA12
Genetic Testing Registry PCDHA12
NextProtQ9UN75 [Medical]
TSGene56137
GENETestsPCDHA12
Huge Navigator PCDHA12 [HugePedia]
snp3D : Map Gene to Disease56137
BioCentury BCIQPCDHA12
ClinGenPCDHA12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56137
Chemical/Pharm GKB GenePA33012
Clinical trialPCDHA12
Miscellaneous
canSAR (ICR)PCDHA12 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCDHA12
EVEXPCDHA12
GoPubMedPCDHA12
iHOPPCDHA12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:37:56 CET 2017

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