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PCDHA13 (protocadherin alpha 13)

Identity

Alias_namesCNRS5
Alias_symbol (synonym)CNR5
CRNR5
CNRN5
PCDH-ALPHA13
Other alias
HGNC (Hugo) PCDHA13
LocusID (NCBI) 56136
Atlas_Id 71708
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 140882269 and ends at 141012344 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCDHA13   8667
Cards
Entrez_Gene (NCBI)PCDHA13  56136  protocadherin alpha 13
AliasesCNR5; CNRN5; CNRS5; CRNR5; 
PCDH-ALPHA13
GeneCards (Weizmann)PCDHA13
Ensembl hg19 (Hinxton)ENSG00000239389 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000239389 [Gene_View]  chr5:140882269-141012344 [Contig_View]  PCDHA13 [Vega]
ICGC DataPortalENSG00000239389
TCGA cBioPortalPCDHA13
AceView (NCBI)PCDHA13
Genatlas (Paris)PCDHA13
WikiGenes56136
SOURCE (Princeton)PCDHA13
Genetics Home Reference (NIH)PCDHA13
Genomic and cartography
GoldenPath hg38 (UCSC)PCDHA13  -     chr5:140882269-141012344 +  5q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCDHA13  -     5q31.3   [Description]    (hg19-Feb_2009)
EnsemblPCDHA13 - 5q31.3 [CytoView hg19]  PCDHA13 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIPCDHA13 [Mapview hg19]  PCDHA13 [Mapview hg38]
OMIM606319   
Gene and transcription
Genbank (Entrez)AB208924 AF152309 AF152478
RefSeq transcript (Entrez)NM_018904 NM_031865
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCDHA13
Cluster EST : UnigeneHs.199343 [ NCBI ]
CGAP (NCI)Hs.199343
Alternative Splicing GalleryENSG00000239389
Gene ExpressionPCDHA13 [ NCBI-GEO ]   PCDHA13 [ EBI - ARRAY_EXPRESS ]   PCDHA13 [ SEEK ]   PCDHA13 [ MEM ]
Gene Expression Viewer (FireBrowse)PCDHA13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56136
GTEX Portal (Tissue expression)PCDHA13
Human Protein AtlasENSG00000239389-PCDHA13 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5I0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5I0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5I0
Splice isoforms : SwissVarQ9Y5I0
PhosPhoSitePlusQ9Y5I0
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_CBD    Cadherin_CS    Cadherin_N    PCDHA13   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_2 (PF08266)    Cadherin_tail (PF15974)   
Domain families : Pfam (NCBI)pfam00028    pfam08266    pfam15974   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)PCDHA13
DMDM Disease mutations56136
Blocks (Seattle)PCDHA13
SuperfamilyQ9Y5I0
Human Protein Atlas [tissue]ENSG00000239389-PCDHA13 [tissue]
Peptide AtlasQ9Y5I0
HPRD07554
IPIIPI00001510   IPI00916385   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5I0
IntAct (EBI)Q9Y5I0
FunCoupENSG00000239389
BioGRIDPCDHA13
STRING (EMBL)PCDHA13
ZODIACPCDHA13
Ontologies - Pathways
QuickGOQ9Y5I0
Ontology : AmiGOcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  cell-cell signaling  nervous system development  
Ontology : EGO-EBIcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  cell-cell signaling  nervous system development  
NDEx NetworkPCDHA13
Atlas of Cancer Signalling NetworkPCDHA13
Wikipedia pathwaysPCDHA13
Orthology - Evolution
OrthoDB56136
GeneTree (enSembl)ENSG00000239389
Phylogenetic Trees/Animal Genes : TreeFamPCDHA13
HOVERGENQ9Y5I0
HOGENOMQ9Y5I0
Homologs : HomoloGenePCDHA13
Homology/Alignments : Family Browser (UCSC)PCDHA13
Gene fusions - Rearrangements
Tumor Fusion PortalPCDHA13
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCDHA13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCDHA13
dbVarPCDHA13
ClinVarPCDHA13
1000_GenomesPCDHA13 
Exome Variant ServerPCDHA13
ExAC (Exome Aggregation Consortium)ENSG00000239389
GNOMAD BrowserENSG00000239389
Genetic variants : HAPMAP56136
Genomic Variants (DGV)PCDHA13 [DGVbeta]
DECIPHERPCDHA13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPCDHA13 
Mutations
ICGC Data PortalPCDHA13 
TCGA Data PortalPCDHA13 
Broad Tumor PortalPCDHA13
OASIS PortalPCDHA13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCDHA13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCDHA13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCDHA13
DgiDB (Drug Gene Interaction Database)PCDHA13
DoCM (Curated mutations)PCDHA13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCDHA13 (select a term)
intoGenPCDHA13
Cancer3DPCDHA13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606319   
Orphanet
DisGeNETPCDHA13
MedgenPCDHA13
Genetic Testing Registry PCDHA13
NextProtQ9Y5I0 [Medical]
TSGene56136
GENETestsPCDHA13
Target ValidationPCDHA13
Huge Navigator PCDHA13 [HugePedia]
snp3D : Map Gene to Disease56136
BioCentury BCIQPCDHA13
ClinGenPCDHA13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56136
Chemical/Pharm GKB GenePA33013
Clinical trialPCDHA13
Miscellaneous
canSAR (ICR)PCDHA13 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCDHA13
EVEXPCDHA13
GoPubMedPCDHA13
iHOPPCDHA13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 20:06:24 CET 2017

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