Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

PCDHA2 (protocadherin alpha 2)

Identity

Other aliasPCDH-ALPHA2
HGNC (Hugo) PCDHA2
LocusID (NCBI) 56146
Atlas_Id 71709
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 140794859 and ends at 141012344 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MATR3 (5q31.2) / PCDHA2 (5q31.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCDHA2   8668
Cards
Entrez_Gene (NCBI)PCDHA2  56146  protocadherin alpha 2
AliasesPCDH-ALPHA2
GeneCards (Weizmann)PCDHA2
Ensembl hg19 (Hinxton)ENSG00000204969 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204969 [Gene_View]  chr5:140794859-141012344 [Contig_View]  PCDHA2 [Vega]
ICGC DataPortalENSG00000204969
TCGA cBioPortalPCDHA2
AceView (NCBI)PCDHA2
Genatlas (Paris)PCDHA2
WikiGenes56146
SOURCE (Princeton)PCDHA2
Genetics Home Reference (NIH)PCDHA2
Genomic and cartography
GoldenPath hg38 (UCSC)PCDHA2  -     chr5:140794859-141012344 +  5q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCDHA2  -     5q31.3   [Description]    (hg19-Feb_2009)
EnsemblPCDHA2 - 5q31.3 [CytoView hg19]  PCDHA2 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIPCDHA2 [Mapview hg19]  PCDHA2 [Mapview hg38]
OMIM606308   
Gene and transcription
Genbank (Entrez)AF152310 AF152480 BC003126
RefSeq transcript (Entrez)NM_018905 NM_031495 NM_031496
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCDHA2
Cluster EST : UnigeneHs.199343 [ NCBI ]
CGAP (NCI)Hs.199343
Alternative Splicing GalleryENSG00000204969
Gene ExpressionPCDHA2 [ NCBI-GEO ]   PCDHA2 [ EBI - ARRAY_EXPRESS ]   PCDHA2 [ SEEK ]   PCDHA2 [ MEM ]
Gene Expression Viewer (FireBrowse)PCDHA2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56146
GTEX Portal (Tissue expression)PCDHA2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5H9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5H9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5H9
Splice isoforms : SwissVarQ9Y5H9
PhosPhoSitePlusQ9Y5H9
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_CBD    Cadherin_CS    Cadherin_N   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_2 (PF08266)    Cadherin_tail (PF15974)   
Domain families : Pfam (NCBI)pfam00028    pfam08266    pfam15974   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)PCDHA2
DMDM Disease mutations56146
Blocks (Seattle)PCDHA2
SuperfamilyQ9Y5H9
Human Protein AtlasENSG00000204969
Peptide AtlasQ9Y5H9
HPRD07320
IPIIPI00001498   IPI00221330   IPI00337833   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5H9
IntAct (EBI)Q9Y5H9
FunCoupENSG00000204969
BioGRIDPCDHA2
STRING (EMBL)PCDHA2
ZODIACPCDHA2
Ontologies - Pathways
QuickGOQ9Y5H9
Ontology : AmiGOcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  cell-cell signaling  nervous system development  
Ontology : EGO-EBIcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  cell-cell signaling  nervous system development  
NDEx NetworkPCDHA2
Atlas of Cancer Signalling NetworkPCDHA2
Wikipedia pathwaysPCDHA2
Orthology - Evolution
OrthoDB56146
GeneTree (enSembl)ENSG00000204969
Phylogenetic Trees/Animal Genes : TreeFamPCDHA2
HOVERGENQ9Y5H9
HOGENOMQ9Y5H9
Homologs : HomoloGenePCDHA2
Homology/Alignments : Family Browser (UCSC)PCDHA2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCDHA2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCDHA2
dbVarPCDHA2
ClinVarPCDHA2
1000_GenomesPCDHA2 
Exome Variant ServerPCDHA2
ExAC (Exome Aggregation Consortium)PCDHA2 (select the gene name)
Genetic variants : HAPMAP56146
Genomic Variants (DGV)PCDHA2 [DGVbeta]
DECIPHERPCDHA2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPCDHA2 
Mutations
ICGC Data PortalPCDHA2 
TCGA Data PortalPCDHA2 
Broad Tumor PortalPCDHA2
OASIS PortalPCDHA2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCDHA2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCDHA2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCDHA2
DgiDB (Drug Gene Interaction Database)PCDHA2
DoCM (Curated mutations)PCDHA2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCDHA2 (select a term)
intoGenPCDHA2
Cancer3DPCDHA2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606308   
Orphanet
MedgenPCDHA2
Genetic Testing Registry PCDHA2
NextProtQ9Y5H9 [Medical]
TSGene56146
GENETestsPCDHA2
Target ValidationPCDHA2
Huge Navigator PCDHA2 [HugePedia]
snp3D : Map Gene to Disease56146
BioCentury BCIQPCDHA2
ClinGenPCDHA2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56146
Chemical/Pharm GKB GenePA33014
Clinical trialPCDHA2
Miscellaneous
canSAR (ICR)PCDHA2 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCDHA2
EVEXPCDHA2
GoPubMedPCDHA2
iHOPPCDHA2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:34:03 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.