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PCDHA3 (protocadherin alpha 3)

Identity

Alias_symbol (synonym)PCDH-ALPHA3
Other alias
HGNC (Hugo) PCDHA3
LocusID (NCBI) 56145
Atlas_Id 71710
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 140801198 and ends at 141012344 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCDHA3   8669
Cards
Entrez_Gene (NCBI)PCDHA3  56145  protocadherin alpha 3
AliasesPCDH-ALPHA3
GeneCards (Weizmann)PCDHA3
Ensembl hg19 (Hinxton)ENSG00000255408 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000255408 [Gene_View]  chr5:140801198-141012344 [Contig_View]  PCDHA3 [Vega]
ICGC DataPortalENSG00000255408
TCGA cBioPortalPCDHA3
AceView (NCBI)PCDHA3
Genatlas (Paris)PCDHA3
WikiGenes56145
SOURCE (Princeton)PCDHA3
Genetics Home Reference (NIH)PCDHA3
Genomic and cartography
GoldenPath hg38 (UCSC)PCDHA3  -     chr5:140801198-141012344 +  5q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)PCDHA3  -     5q31.3   [Description]    (hg19-Feb_2009)
EnsemblPCDHA3 - 5q31.3 [CytoView hg19]  PCDHA3 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIPCDHA3 [Mapview hg19]  PCDHA3 [Mapview hg38]
OMIM606309   
Gene and transcription
Genbank (Entrez)AF152311 AF152481 BC069064 BC129807
RefSeq transcript (Entrez)NM_018906 NM_031497
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)PCDHA3
Cluster EST : UnigeneHs.199343 [ NCBI ]
CGAP (NCI)Hs.199343
Alternative Splicing GalleryENSG00000255408
Gene ExpressionPCDHA3 [ NCBI-GEO ]   PCDHA3 [ EBI - ARRAY_EXPRESS ]   PCDHA3 [ SEEK ]   PCDHA3 [ MEM ]
Gene Expression Viewer (FireBrowse)PCDHA3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56145
GTEX Portal (Tissue expression)PCDHA3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5H8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5H8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5H8
Splice isoforms : SwissVarQ9Y5H8
PhosPhoSitePlusQ9Y5H8
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_CBD    Cadherin_CS    Cadherin_N   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_2 (PF08266)    Cadherin_tail (PF15974)   
Domain families : Pfam (NCBI)pfam00028    pfam08266    pfam15974   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)PCDHA3
DMDM Disease mutations56145
Blocks (Seattle)PCDHA3
SuperfamilyQ9Y5H8
Human Protein AtlasENSG00000255408
Peptide AtlasQ9Y5H8
HPRD07321
IPIIPI00001497   IPI00221243   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5H8
IntAct (EBI)Q9Y5H8
FunCoupENSG00000255408
BioGRIDPCDHA3
STRING (EMBL)PCDHA3
ZODIACPCDHA3
Ontologies - Pathways
QuickGOQ9Y5H8
Ontology : AmiGOcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  cell-cell signaling  nervous system development  
Ontology : EGO-EBIcalcium ion binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  cell-cell signaling  nervous system development  
NDEx NetworkPCDHA3
Atlas of Cancer Signalling NetworkPCDHA3
Wikipedia pathwaysPCDHA3
Orthology - Evolution
OrthoDB56145
GeneTree (enSembl)ENSG00000255408
Phylogenetic Trees/Animal Genes : TreeFamPCDHA3
HOVERGENQ9Y5H8
HOGENOMQ9Y5H8
Homologs : HomoloGenePCDHA3
Homology/Alignments : Family Browser (UCSC)PCDHA3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCDHA3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCDHA3
dbVarPCDHA3
ClinVarPCDHA3
1000_GenomesPCDHA3 
Exome Variant ServerPCDHA3
ExAC (Exome Aggregation Consortium)PCDHA3 (select the gene name)
Genetic variants : HAPMAP56145
Genomic Variants (DGV)PCDHA3 [DGVbeta]
DECIPHERPCDHA3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisPCDHA3 
Mutations
ICGC Data PortalPCDHA3 
TCGA Data PortalPCDHA3 
Broad Tumor PortalPCDHA3
OASIS PortalPCDHA3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCDHA3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCDHA3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCDHA3
DgiDB (Drug Gene Interaction Database)PCDHA3
DoCM (Curated mutations)PCDHA3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCDHA3 (select a term)
intoGenPCDHA3
Cancer3DPCDHA3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606309   
Orphanet
MedgenPCDHA3
Genetic Testing Registry PCDHA3
NextProtQ9Y5H8 [Medical]
TSGene56145
GENETestsPCDHA3
Target ValidationPCDHA3
Huge Navigator PCDHA3 [HugePedia]
snp3D : Map Gene to Disease56145
BioCentury BCIQPCDHA3
ClinGenPCDHA3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56145
Chemical/Pharm GKB GenePA33015
Clinical trialPCDHA3
Miscellaneous
canSAR (ICR)PCDHA3 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCDHA3
EVEXPCDHA3
GoPubMedPCDHA3
iHOPPCDHA3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:35:40 CEST 2017

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