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PCDHA4 (protocadherin alpha 4)

Identity

Alias_symbol (synonym)CNR1
CRNR1
PCDH-ALPHA4
CNRN1
Other alias
HGNC (Hugo) PCDHA4
LocusID (NCBI) 56144
Atlas_Id 71711
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 140186659 and ends at 140391929 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)PCDHA4   8670
Cards
Entrez_Gene (NCBI)PCDHA4  56144  protocadherin alpha 4
AliasesCNR1; CNRN1; CRNR1; PCDH-ALPHA4
GeneCards (Weizmann)PCDHA4
Ensembl hg19 (Hinxton)ENSG00000204967 [Gene_View]  chr5:140186659-140391929 [Contig_View]  PCDHA4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000204967 [Gene_View]  chr5:140186659-140391929 [Contig_View]  PCDHA4 [Vega]
ICGC DataPortalENSG00000204967
TCGA cBioPortalPCDHA4
AceView (NCBI)PCDHA4
Genatlas (Paris)PCDHA4
WikiGenes56144
SOURCE (Princeton)PCDHA4
Genetics Home Reference (NIH)PCDHA4
Genomic and cartography
GoldenPath hg19 (UCSC)PCDHA4  -     chr5:140186659-140391929 +  5q31.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)PCDHA4  -     5q31.3   [Description]    (hg38-Dec_2013)
EnsemblPCDHA4 - 5q31.3 [CytoView hg19]  PCDHA4 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIPCDHA4 [Mapview hg19]  PCDHA4 [Mapview hg38]
OMIM606310   
Gene and transcription
Genbank (Entrez)AB208925 AF152312 AF152482 AW161561 BC112102
RefSeq transcript (Entrez)NM_018907 NM_031500
RefSeq genomic (Entrez)NC_000005 NC_018916 NG_000016 NT_029289 NW_004929324
Consensus coding sequences : CCDS (NCBI)PCDHA4
Cluster EST : UnigeneHs.199343 [ NCBI ]
CGAP (NCI)Hs.199343
Alternative Splicing GalleryENSG00000204967
Gene ExpressionPCDHA4 [ NCBI-GEO ]   PCDHA4 [ EBI - ARRAY_EXPRESS ]   PCDHA4 [ SEEK ]   PCDHA4 [ MEM ]
Gene Expression Viewer (FireBrowse)PCDHA4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56144
GTEX Portal (Tissue expression)PCDHA4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UN74   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UN74  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UN74
Splice isoforms : SwissVarQ9UN74
PhosPhoSitePlusQ9UN74
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_CS    Cadherin_N   
Domain families : Pfam (Sanger)Cadherin (PF00028)    Cadherin_2 (PF08266)   
Domain families : Pfam (NCBI)pfam00028    pfam08266   
Domain families : Smart (EMBL)CA (SM00112)  
Conserved Domain (NCBI)PCDHA4
DMDM Disease mutations56144
Blocks (Seattle)PCDHA4
SuperfamilyQ9UN74
Human Protein AtlasENSG00000204967
Peptide AtlasQ9UN74
HPRD07322
IPIIPI00009044   IPI00981749   
Protein Interaction databases
DIP (DOE-UCLA)Q9UN74
IntAct (EBI)Q9UN74
FunCoupENSG00000204967
BioGRIDPCDHA4
STRING (EMBL)PCDHA4
ZODIACPCDHA4
Ontologies - Pathways
QuickGOQ9UN74
Ontology : AmiGOcalcium ion binding  protein binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  nervous system development  
Ontology : EGO-EBIcalcium ion binding  protein binding  integral component of plasma membrane  cell adhesion  homophilic cell adhesion via plasma membrane adhesion molecules  nervous system development  
NDEx NetworkPCDHA4
Atlas of Cancer Signalling NetworkPCDHA4
Wikipedia pathwaysPCDHA4
Orthology - Evolution
OrthoDB56144
GeneTree (enSembl)ENSG00000204967
Phylogenetic Trees/Animal Genes : TreeFamPCDHA4
HOVERGENQ9UN74
HOGENOMQ9UN74
Homologs : HomoloGenePCDHA4
Homology/Alignments : Family Browser (UCSC)PCDHA4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerPCDHA4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)PCDHA4
dbVarPCDHA4
ClinVarPCDHA4
1000_GenomesPCDHA4 
Exome Variant ServerPCDHA4
ExAC (Exome Aggregation Consortium)PCDHA4 (select the gene name)
Genetic variants : HAPMAP56144
Genomic Variants (DGV)PCDHA4 [DGVbeta]
DECIPHER (Syndromes)5:140186659-140391929  ENSG00000204967
CONAN: Copy Number AnalysisPCDHA4 
Mutations
ICGC Data PortalPCDHA4 
TCGA Data PortalPCDHA4 
Broad Tumor PortalPCDHA4
OASIS PortalPCDHA4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICPCDHA4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDPCDHA4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch PCDHA4
DgiDB (Drug Gene Interaction Database)PCDHA4
DoCM (Curated mutations)PCDHA4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)PCDHA4 (select a term)
intoGenPCDHA4
Cancer3DPCDHA4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606310   
Orphanet
MedgenPCDHA4
Genetic Testing Registry PCDHA4
NextProtQ9UN74 [Medical]
TSGene56144
GENETestsPCDHA4
Huge Navigator PCDHA4 [HugePedia]
snp3D : Map Gene to Disease56144
BioCentury BCIQPCDHA4
ClinGenPCDHA4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56144
Chemical/Pharm GKB GenePA33016
Clinical trialPCDHA4
Miscellaneous
canSAR (ICR)PCDHA4 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMinePCDHA4
EVEXPCDHA4
GoPubMedPCDHA4
iHOPPCDHA4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:37:57 CET 2017

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